General information
PDB ID 1LQ1
Title DNA COMPLEXED STRUCTURE OF THE KEY TRANSCRIPTION FACTOR INITIATING DEVELOPMENT IN SPORULATION BACTERIA
PDB header TRANSCRIPTION/DNA
Date 2002-05-08
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.3
Kind dna
Organism BACILLUS SUBTILIS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1lq1.pdb ABCD EFGH 0
Biounits:
1lq1.pdb1.pdb CD EF 1
1lq1.pdb2.pdb AB GH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Spo0A_C Domain P06534_157-260 1.6e-40 1 CL0236 A 157 260 GH  H-Bb H-Mj L-Bb L-Mj 
Spo0A_C Domain P06534_157-260 1.4e-40 1 CL0236 B 157 260 G  H-Bb H-Mj L-Bb 
Spo0A_C Domain P06534_157-260 3.4e-43 1 CL0236 C 157 260 E  H-Bb H-Mj 
Spo0A_C Domain P06534_157-260 4.8e-41 1 CL0236 D 157 260 EF  H-Bb H-Mj L-Bb L-Mj 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: C-terminal effector domain of the bipartite response regulators
      Family: Spo0A
Spo0A A N/A N/A GH -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: C-terminal effector domain of the bipartite response regulators
      Family: Spo0A
Spo0A B N/A N/A G -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: C-terminal effector domain of the bipartite response regulators
      Family: Spo0A
Spo0A C N/A N/A E -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: C-terminal effector domain of the bipartite response regulators
      Family: Spo0A
Spo0A D N/A N/A EF -
GO terms
Protein chains: GO type: GO description:
A/B/C/D=148-267 C cytoplasm
A/B/C/D=148-267 F sequence-specific DNA binding transcription factor activity
A/B/C/D=148-267 F calcium ion binding
A/B/C/D=148-267 F two-component response regulator activity
A/B/C/D=148-267 F DNA binding
A/B/C/D=148-267 P transcription, DNA-dependent
A/B/C/D=148-267 P intracellular signal transduction
A/B/C/D=148-267 P detection of stimulus involved in sensory perception
A/B/C/D=148-267 P positive regulation of sporulation resulting in formation of a cellular spore
A/B/C/D=148-267 P asymmetric cell division
A/B/C/D=148-267 P sporulation resulting in formation of a cellular spore
A/B/C/D=148-267 P barrier septum assembly
Sequences
Download file with secondary structure created by Stride  
1lq1.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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C (protein): 
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D (protein): 
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1lq1.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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A (protein): 
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B (protein): 
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