General information
PDB ID 1LV5
Title CRYSTAL STRUCTURE OF THE CLOSED CONFORMATION OF BACILLUS DNA POLYMERASE I FRAGMENT BOUND TO DNA AND DCTP
PDB header TRANSFERASE/DNA
Date 2002-05-24
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.95
Kind dna
Organism GEOBACILLUS STEAROTHERMOPHILUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1lv5.pdb AB CDEF 0
Biounits:
1lv5.pdb1.pdb A CD 1
1lv5.pdb2.pdb B EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_A Family P52026_497-874 1.2e-163 1 No_clan A 497 874 CD   
DNA_pol_A Family P52026_497-874 1.2e-163 1 No_clan B 497 874 EF  H-Bb H-Mn S-Bb L-Bb L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a/b)
  Fold: Ribonuclease H-like motif
    Superfamily: Ribonuclease H-like
      Family: DnaQ-like 3'-5' exonuclease
Exonuclease domain of prokaryotic DNA polymerase A 297 468 -
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: DNA polymerase I
DNA polymerase I (Klenow fragment) A 469 876 CD -
Class: Alpha and beta proteins (a/b)
  Fold: Ribonuclease H-like motif
    Superfamily: Ribonuclease H-like
      Family: DnaQ-like 3'-5' exonuclease
Exonuclease domain of prokaryotic DNA polymerase B 297 468 -
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: DNA polymerase I
DNA polymerase I (Klenow fragment) B 469 876 EF -
GO terms
Protein chains: GO type: GO description:
A/B=304-876 C intracellular
A/B=304-876 F DNA-directed DNA polymerase activity
A/B=304-876 F 3'-5' exonuclease activity
A/B=304-876 F DNA binding
A/B=304-876 F 5'-3' exonuclease activity
A/B=304-876 P DNA repair
A/B=304-876 P nucleic acid phosphodiester bond hydrolysis
A/B=304-876 P DNA replication
Sequences
Download file with secondary structure created by Stride  
1lv5.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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1lv5.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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B (protein): 
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