General information
PDB ID 1M3H
Title CRYSTAL STRUCTURE OF HOGG1 D268E MUTANT WITH PRODUCT OLIGONUCLEOTIDE
PDB header HYDROLASE/DNA
Date 2002-06-27
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.05
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1m3h.pdb A BCD 0
Biounits:
1m3h.pdb1.pdb A BCD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HhH-GPD Domain O15527_142-301 8.3e-19 1 CL0198 A 142 301 BCD  H-Bb H-Mj H-Mn L-Bb L-Mj L-Mn 
OGG_N Family O15527_25-141 3.6e-34 1 CL0407 A 25 141   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA-glycosylase
    Superfamily: DNA-glycosylase
      Family: DNA repair glycosylase, 2 C-terminal domains
8-oxoguanine glycosylase A 136 325 BCD  H-Bb L-Bb L-Mj L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: DNA repair glycosylase, N-terminal domain
8-oxoguanine glycosylase A 9 135 -
GO terms
Protein chains: GO type: GO description:
A=12-325 C mitochondrion
A=12-325 C nuclear matrix
A=12-325 C nuclear speck
A=12-325 C nucleoplasm
A=12-325 C nucleus
A=12-325 C protein-containing complex
A=12-325 F 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity
A=12-325 F class I DNA-(apurinic or apyrimidinic site) endonuclease activity
A=12-325 F damaged DNA binding
A=12-325 F endonuclease activity
A=12-325 F microtubule binding
A=12-325 F oxidized purine DNA binding
A=12-325 F oxidized purine nucleobase lesion DNA N-glycosylase activity
A=12-325 P acute inflammatory response
A=12-325 P aging
A=12-325 P base-excision repair
A=12-325 P base-excision repair, AP site formation
A=12-325 P cellular response to cadmium ion
A=12-325 P cellular response to DNA damage stimulus
A=12-325 P depurination
A=12-325 P depyrimidination
A=12-325 P negative regulation of apoptotic process
A=12-325 P negative regulation of double-strand break repair via single-strand annealing
A=12-325 P nucleotide-excision repair, DNA incision
A=12-325 P regulation of transcription, DNA-templated
A=12-325 P response to drug
A=12-325 P response to estradiol
A=12-325 P response to ethanol
A=12-325 P response to folic acid
A=12-325 P response to light stimulus
A=12-325 P response to oxidative stress
A=12-325 P response to radiation
Sequences
Download file with secondary structure created by Stride  
1m3h.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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D (dna): 
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A (protein): 
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