General information
PDB ID 1M6X
Title FLPE-HOLLIDAY JUNCTION COMPLEX
PDB header LIGASE, LYASE/DNA
Date 2002-07-17
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.8
Kind dna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1m6x.pdb ABCD EIFJGH 0
Biounits:
1m6x.pdb1.pdb ABCD EIFJGH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Flp_N Domain P03870_44-128 1.7e-26 1 CL0469 A 44 128 EH  H-Bb H-Mj S-Bb L-Mj 
Flp_N Domain P03870_44-128 1.7e-26 1 CL0469 B 44 128 FG  H-Bb H-Mj S-Bb L-Mj 
Flp_N Domain P03870_44-128 4.6e-26 1 CL0469 C 44 128 GI  H-Bb H-Mj S-Bb L-Bb L-Mj 
Flp_N Domain P03870_44-128 4.6e-26 1 CL0469 D 44 128 HJ  H-Bb H-Mj S-Bb L-Bb L-Mj 
Flp_C Family P03870_137-379 1.3e-156 1 CL0382 A 137 379 EHI  H-Bb H-Mj L-Bb L-Mn 
Flp_C Family P03870_137-379 4.5e-160 1 CL0382 B 137 379 FGJ  H-Bb H-Mj L-Bb L-Mn 
Flp_C Family P03870_137-379 3.5e-164 1 CL0382 C 137 379 GIFJ  H-Bb H-Mj L-Bb L-Mn 
Flp_C Family P03870_137-379 3.5e-164 1 CL0382 D 137 379 HJEI  H-Bb H-Mj L-Bb L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: lambda integrase-like, N-terminal domain
      Family: lambda integrase-like, N-terminal domain
Flp recombinase A 2 129 EH  H-Bb H-Mj L-Bb L-Mj 
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: lambda integrase-like, N-terminal domain
      Family: lambda integrase-like, N-terminal domain
Flp recombinase B 2 129 FG  H-Bb H-Mj L-Bb L-Mj 
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: lambda integrase-like, N-terminal domain
      Family: lambda integrase-like, N-terminal domain
Flp recombinase C 2 129 GI  H-Bb H-Mj L-Bb L-Mj 
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: lambda integrase-like, N-terminal domain
      Family: lambda integrase-like, N-terminal domain
Flp recombinase D 2 129 HJ  H-Bb H-Mj S-Bb L-Bb L-Mj 
Class: Alpha and beta proteins (a+b)
  Fold: DNA breaking-rejoining enzymes
    Superfamily: DNA breaking-rejoining enzymes
      Family: Lambda integrase-like, catalytic core
Flp recombinase A 136 422 EHI  H-Bb H-Mj L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: DNA breaking-rejoining enzymes
    Superfamily: DNA breaking-rejoining enzymes
      Family: Lambda integrase-like, catalytic core
Flp recombinase B 136 422 FGJ  H-Bb H-Mj L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: DNA breaking-rejoining enzymes
    Superfamily: DNA breaking-rejoining enzymes
      Family: Lambda integrase-like, catalytic core
Flp recombinase C 137 422 GIFJ  H-Bb H-Mj L-Bb 
Class: Alpha and beta proteins (a+b)
  Fold: DNA breaking-rejoining enzymes
    Superfamily: DNA breaking-rejoining enzymes
      Family: Lambda integrase-like, catalytic core
Flp recombinase D 137 422 HJEI  H-Bb H-Mj L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
A/B/C/D=3-423 F DNA binding, bending
A/B/C/D=3-423 F double-stranded DNA binding
A/B/C/D=3-423 F single-stranded DNA binding
A/B/C/D=3-423 F site-specific recombinase activity
A/B/C/D=3-423 P DNA integration
A/B/C/D=3-423 P plasmid recombination
Sequences
Download file with secondary structure created by Stride  
1m6x.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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G (dna): 
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H (dna): 
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I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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