General information
PDB ID 1M8V
Title STRUCTURE OF PYROCOCCUS ABYSSII SM PROTEIN IN COMPLEX WITH A URIDINE HEPTAMER
PDB header RNA BINDING PROTEIN/RNA
Date 2002-07-26
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.6
Kind rna
Organism PYROCOCCUS ABYSSI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1m8v.pdb ABCDEFGHIJKLMN OPQRSTU 0
Biounits:
1m8v.pdb1.pdb ABCDEFGHIJKLMN OPQRSTU 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
LSM Domain Q9V0Y8_7-72 2.8e-19 1 CL0527 A 107 172 AOUB   
LSM Domain Q9V0Y8_7-72 2.6e-19 1 CL0527 B 207 272 ABT   
LSM Domain Q9V0Y8_7-72 2.6e-19 1 CL0527 C 307 372 CPD   
LSM Domain Q9V0Y8_7-72 2.6e-19 1 CL0527 D 407 472 DSE   
LSM Domain Q9V0Y8_7-72 2.6e-19 1 CL0527 E 507 572 DERSF   
LSM Domain Q9V0Y8_7-72 2.6e-19 1 CL0527 F 607 672 FQR   
LSM Domain Q9V0Y8_7-72 2.6e-19 1 CL0527 G 707 772 GQU   
LSM Domain Q9V0Y8_7-72 2.6e-19 1 CL0527 H 107 172 HQ   
LSM Domain Q9V0Y8_7-72 2.6e-19 1 CL0527 I 207 272 IRJ   
LSM Domain Q9V0Y8_7-72 2.6e-19 1 CL0527 J 307 372 JSK   
LSM Domain Q9V0Y8_7-72 2.6e-19 1 CL0527 K 407 472 KLP   
LSM Domain Q9V0Y8_7-72 2.6e-19 1 CL0527 L 507 572 KLPTM   
LSM Domain Q9V0Y8_7-72 2.6e-19 1 CL0527 M 607 672 MO   
LSM Domain Q9V0Y8_7-72 2.6e-19 1 CL0527 N 707 772 MOU   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: Sm-like fold
    Superfamily: Sm-like ribonucleoproteins
      Family: Sm motif of small nuclear ribonucleoproteins, SNRNP
Archaeal homoheptameric Sm protein A N/A N/A AOUTB -
Class: All beta proteins
  Fold: Sm-like fold
    Superfamily: Sm-like ribonucleoproteins
      Family: Sm motif of small nuclear ribonucleoproteins, SNRNP
Archaeal homoheptameric Sm protein B N/A N/A ABTP -
Class: All beta proteins
  Fold: Sm-like fold
    Superfamily: Sm-like ribonucleoproteins
      Family: Sm motif of small nuclear ribonucleoproteins, SNRNP
Archaeal homoheptameric Sm protein C N/A N/A CPDS -
Class: All beta proteins
  Fold: Sm-like fold
    Superfamily: Sm-like ribonucleoproteins
      Family: Sm motif of small nuclear ribonucleoproteins, SNRNP
Archaeal homoheptameric Sm protein D N/A N/A DSER -
Class: All beta proteins
  Fold: Sm-like fold
    Superfamily: Sm-like ribonucleoproteins
      Family: Sm motif of small nuclear ribonucleoproteins, SNRNP
Archaeal homoheptameric Sm protein E N/A N/A DERSFQ -
Class: All beta proteins
  Fold: Sm-like fold
    Superfamily: Sm-like ribonucleoproteins
      Family: Sm motif of small nuclear ribonucleoproteins, SNRNP
Archaeal homoheptameric Sm protein F N/A N/A FQRU -
Class: All beta proteins
  Fold: Sm-like fold
    Superfamily: Sm-like ribonucleoproteins
      Family: Sm motif of small nuclear ribonucleoproteins, SNRNP
Archaeal homoheptameric Sm protein G N/A N/A GQUO -
Class: All beta proteins
  Fold: Sm-like fold
    Superfamily: Sm-like ribonucleoproteins
      Family: Sm motif of small nuclear ribonucleoproteins, SNRNP
Archaeal homoheptameric Sm protein H N/A N/A HQR -
Class: All beta proteins
  Fold: Sm-like fold
    Superfamily: Sm-like ribonucleoproteins
      Family: Sm motif of small nuclear ribonucleoproteins, SNRNP
Archaeal homoheptameric Sm protein I N/A N/A IRSJ -
Class: All beta proteins
  Fold: Sm-like fold
    Superfamily: Sm-like ribonucleoproteins
      Family: Sm motif of small nuclear ribonucleoproteins, SNRNP
Archaeal homoheptameric Sm protein J N/A N/A JSKP -
Class: All beta proteins
  Fold: Sm-like fold
    Superfamily: Sm-like ribonucleoproteins
      Family: Sm motif of small nuclear ribonucleoproteins, SNRNP
Archaeal homoheptameric Sm protein K N/A N/A KLPT -
Class: All beta proteins
  Fold: Sm-like fold
    Superfamily: Sm-like ribonucleoproteins
      Family: Sm motif of small nuclear ribonucleoproteins, SNRNP
Archaeal homoheptameric Sm protein L N/A N/A KLPTMO -
Class: All beta proteins
  Fold: Sm-like fold
    Superfamily: Sm-like ribonucleoproteins
      Family: Sm motif of small nuclear ribonucleoproteins, SNRNP
Archaeal homoheptameric Sm protein M N/A N/A MOU -
Class: All beta proteins
  Fold: Sm-like fold
    Superfamily: Sm-like ribonucleoproteins
      Family: Sm motif of small nuclear ribonucleoproteins, SNRNP
Archaeal homoheptameric Sm protein N N/A N/A MOQU -
GO terms
Protein chains: GO type: GO description:
A/B/C/D/E/F/G/H/I/J/K/L/M/N=1-75 C ribonucleoprotein complex
Sequences
Download file with secondary structure created by Stride  
1m8v.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (rna): 
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P (rna): 
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Q (rna): 
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R (rna): 
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S (rna): 
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T (rna): 
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U (rna): 
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