General information
PDB ID 1MJ1
Title FITTING THE TERNARY COMPLEX OF EF-TU/TRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME
PDB header RIBOSOME
Date 2002-08-26
Experimental method ELECTRON MICROSCOPY
Resolution (A) 13
Kind rna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1mj1.pdb AOPL DCQR 0
Biounits:
1mj1.pdb1.pdb AOPL DCQR 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
GTP_EFTU Domain Q01698_10-213 5.8e-58 1 CL0023 A 9 212   
GTP_EFTU_D3 Domain Q01698_310-405 1.7e-31 1 No_clan A 309 404 D   
GTP_EFTU_D2 Domain Q01698_236-306 5.1e-18 1 CL0575 A 235 305   
Ribosomal_L11_N Domain P29395_8-66 2.6e-31 1 No_clan L 2 59   
Ribosomal_L11 Domain P29395_71-139 4.2e-29 1 No_clan L 64 132   
Ribosom_S12_S23 Family Q5SHN3_12-123 2.4e-43 1 CL0021 O 11 122   
Ribosomal_S13 Family P80377_3-109 8.9e-33 1 CL0303 P 2 108   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex A N/A N/A D -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex L N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex O N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex P N/A N/A -
GO terms
Protein chains: GO type: GO description:
O=5-123 C cytosolic small ribosomal subunit
O=5-123 F rRNA binding
O=5-123 F tRNA binding
O=5-123 F structural constituent of ribosome
O=5-123 F misfolded RNA binding
O=5-123 P translation
O=5-123 P response to antibiotic
O=5-123 P Group I intron splicing
O=5-123 P positive regulation of RNA splicing
O=5-123 P RNA folding
Sequences
Download file with secondary structure created by Stride  
1mj1.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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L (protein): 
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O (protein): 
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P (protein): 
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C (rna): 
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D (rna): 
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Q (rna): 
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R (rna): 
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