General information
PDB ID 1MJI
Title DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMPLEX
PDB header RIBOSOME
Date 2002-08-28
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.5
Kind rna
Organism ESCHERICHIA COLI, THERMUS THERMOPHILUS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1mji.pdb AB CD 0
Biounits:
1mji.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L5_C Domain P41201_87-180 4.2e-31 1 No_clan A 87 180 CD   
Ribosomal_L5 Domain P41201_27-83 1.3e-26 1 CL0652 A 27 83 CD   
Ribosomal_L5_C Domain P41201_87-180 4.1e-31 1 No_clan B 87 180 CD   
Ribosomal_L5 Domain P41201_27-83 1.2e-26 1 CL0652 B 27 83 CD   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: RL5-like
    Superfamily: RL5-like
      Family: Ribosomal protein L5
Ribosomal protein L5 A N/A N/A CD -
Class: Alpha and beta proteins (a+b)
  Fold: RL5-like
    Superfamily: RL5-like
      Family: Ribosomal protein L5
Ribosomal protein L5 B N/A N/A CD -
GO terms
Protein chains: GO type: GO description:
A/B=1-182 C ribosome
A/B=1-182 F rRNA binding
A/B=1-182 F structural constituent of ribosome
A/B=1-182 F tRNA binding
A/B=1-182 P translation
Sequences
Download file with secondary structure created by Stride  
1mji.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (rna): 
Click "SHOW" for view sequence
D (rna): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text