General information
PDB ID 1ML5
Title STRUCTURE OF THE E. COLI RIBOSOMAL TERMINATION COMPLEX WITH RELEASE FACTOR 2
PDB header RIBOSOME
Date 2002-08-30
Experimental method ELECTRON MICROSCOPY
Resolution (A) 14
Kind rna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1ml5.pdb ZEFGHIJKLMNOPQRSTUVWXcdefghlmnopqrstuvwx ABCab 0
Biounits:
1ml5.pdb1.pdb ZEFGHIJKLMNOPQRSTUVWXcdefghlmnopqrstuvwx ABCab 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L1 Domain Q5SLP7_30-221 2e-54 1 No_clan c 28 220   
Ribosomal_L2_C Domain P04257_125-233 1.4e-47 1 CL0107 d 124 237   
Ribosomal_L2 Domain P04257_61-118 7.2e-24 1 CL0021 d 60 117   
Ribosomal_S3_C Domain 1.5e-33 1 No_clan F 120 202
KH_2 Domain P80372_38-111 2.1e-18 1 CL0007 F 38 111   
S4 Domain 1.8e-23 1 CL0492 G 99 146
Ribosomal_L5 Domain P14124_12-65 3.7e-16 1 CL0652 g 11 64   
Ribosomal_L5_C Domain P14124_69-157 0.000000031 1 No_clan g 68 148   
Ribosomal_S5_C Domain Q5SHQ5_81-152 2e-28 1 CL0329 H 81 152   
Ribosomal_L6 Domain Q5L408_11-82 9.8e-27 1 No_clan h 10 81   
Ribosomal_S5 Domain Q5SHQ5_6-70 2.6e-23 1 CL0196 H 6 70   
Ribosomal_L6 Domain Q5L408_90-165 8.9e-22 1 No_clan h 89 164   
Ribosomal_S6 Domain Q5SLP8_3-92 4.7e-21 1 No_clan I 3 92   
Ribosomal_S7 Domain P17291_2-149 8.1e-63 1 No_clan J 2 149   
Ribosomal_S8 Domain A0A0M9AFS9_4-138 1.4e-49 1 No_clan K 4 138   
Ribosomal_L11_N Domain P29395_8-66 2.6e-31 1 No_clan l 9 66   
Ribosomal_L11 Domain P29395_71-139 4.2e-29 1 No_clan l 71 139   
Ribosomal_L14 Domain Q5L413_1-122 4.3e-55 1 No_clan n 1 122   
Ribosomal_S15 Domain Q5SJ76_8-88 5.1e-39 1 CL0600 R 8 88   
Ribosomal_L22 Domain Q5SHP3_5-108 1.5e-36 1 No_clan s 5 108   
Ribosomal_S17 Domain A0A0N0BLS5_8-75 1.7e-32 1 CL0021 T 8 75   
Ribosomal_S19 Domain Q5SHP2_3-83 2.5e-36 1 No_clan V 3 81   
Ribosomal_L25p Domain P68919_4-91 2.2e-17 1 No_clan v 4 91   
Ribosomal_L30 Domain Q5SHQ6_4-54 8.8e-17 1 No_clan x 4 54   
PCRF Domain P07012_30-220 1e-61 1 No_clan Z 30 220   
Ribosomal_S2 Family 3.6e-91 1 CL0067 E 10 225
Ribosomal_L3 Family P20279_39-321 1.6e-37 1 CL0575 e 111 293   
Ribosomal_L4 Family P12735_16-246 1.4e-38 1 No_clan f 16 246   
Ribosomal_S4 Family P80373_3-98 3.4e-32 1 CL0492 G 3 98   
Ribosomal_S9 Family P80374_8-128 4.9e-44 1 CL0329 L 8 128   
Ribosomal_S10 Family Q5SHN7_5-99 7.5e-34 1 No_clan M 5 99   
Ribosomal_L13 Family P29198_10-114 0.00000061 1 No_clan m 10 132   
Ribosomal_S11 Family P80376_17-126 1.7e-42 1 CL0267 N 17 126   
Ribosom_S12_S23 Family Q5SHN3_12-123 2.4e-43 1 CL0021 O 15 126   
Ribosomal_L27A Family P12737_52-143 0.000000000083 1 CL0588 o 51 142   
Ribosomal_S13 Family P80377_3-109 8.9e-33 1 CL0303 P 3 109   
Ribosomal_L16 Family P60617_12-166 0.000000000000012 1 No_clan p 9 147   
Ribosomal_S14 Family A0A0N0BLP2_9-60 2.2e-23 1 No_clan Q 9 60   
Ribosomal_L5e Family P14123_10-100 0.000000000077 1 CL0267 q 9 99   
Ribosomal_L24e Family P14116_5-57 8.8e-19 1 CL0175 r 4 56   
Ribosomal_S16 Family Q5SJH3_8-67 2.1e-26 1 No_clan S 8 67   
Ribosomal_L23 Family P12732_4-77 5.4e-16 1 No_clan t 3 77   
Ribosomal_S18 Family Q5SLQ0_30-79 1.9e-22 1 No_clan U 30 79   
Ribosomal_L26 Family P10972_2-116 1.7e-20 1 No_clan u 1 113   
KOW Family P10972_45-76 0.000000033 1 CL0107 u 44 75   
Ribosomal_L29 Family P10971_7-63 1.1e-21 1 CL0346 w 6 62   
Ribosomal_S20p Family P80380_8-89 1.4e-20 1 No_clan W 8 89   
LUC7 Family 0.00058 0 No_clan W 9 103
Thx Family Q5SIH3_2-25 0.0000000000000022 1 No_clan X 2 25   
RF-1 Family P07012_228-337 5e-40 1 CL0337 Z 228 337   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex C N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex E N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex F N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex G N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex H N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex I N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex J N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex K N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex L N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex M N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex N N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex O N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex P N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex Q N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex R N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex S N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex T N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex U N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex V N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex W N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex X N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex Z N/A N/A -
GO terms
Protein chains: GO type: GO description:
c=2-229 C large ribosomal subunit
c=2-229 F tRNA binding
c=2-229 F rRNA binding
c=2-229 F structural constituent of ribosome
c=2-229 P translation
c=2-229 P negative regulation of translational initiation
v=1-94 C ribosome
v=1-94 F 5S rRNA binding
Z=1-365 C cytoplasm
Z=1-365 F translation release factor activity, codon specific
Z=1-365 P uridine transport
Sequences
Download file with secondary structure created by Stride  
1ml5.pdb1.pdb:   [ download sequences in FASTA format ]
c (protein): 
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d (protein): 
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e (protein): 
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f (protein): 
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g (protein): 
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h (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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l (protein): 
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m (protein): 
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n (protein): 
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O (protein): 
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p (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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t (protein): 
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u (protein): 
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v (protein): 
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w (protein): 
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x (protein): 
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Z (protein): 
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a (rna): 
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B (rna): 
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