General information
PDB ID 1MM8
Title CRYSTAL STRUCTURE OF TN5 TRANSPOSASE COMPLEXED WITH ME DNA
PDB header TRANSCRIPTION/DNA
Date 2002-09-03
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.8
Kind dna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1mm8.pdb A BC 0
Biounits:
1mm8.pdb1.pdb AF BCDE 0
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DDE_Tnp_1 Domain Q46731_124-362 3.4e-18 1 CL0219 A 124 362 BCDE  H-Mn S-Bb S-Mj L-Bb L-Mj 
Dimer_Tnp_Tn5 Domain Q46731_391-470 4.6e-17 1 No_clan A 355 470 BC  H-Bb L-Bb L-Mj 
Tnp_DNA_bind Domain Q46731_11-69 0.0000000000000024 1 No_clan A 11 69 DE   
DDE_Tnp_1 Domain 3.4e-18 1 CL0219 F 124 362 BCDE
Dimer_Tnp_Tn5 Domain 4.6e-17 1 No_clan F 355 470 DE
Tnp_DNA_bind Domain 0.0000000000000024 1 No_clan F 11 69 BC
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a/b)
  Fold: Ribonuclease H-like motif
    Superfamily: Ribonuclease H-like
      Family: Transposase inhibitor (Tn5 transposase)
Transposase inhibitor (Tn5 transposase) A N/A N/A BCDE  H-Bb H-Mj H-Mn S-Mj L-Bb L-Mj 
GO terms
Protein chains: GO type: GO description:
A=1-476 F transposase activity
A=1-476 F metal ion binding
A=1-476 F endonuclease activity
A=1-476 F DNA binding
A=1-476 P transposition, DNA-mediated
A=1-476 P nucleic acid phosphodiester bond hydrolysis
Sequences
Download file with secondary structure created by Stride  
1mm8.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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D (dna): 
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E (dna): 
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A (protein): 
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F (protein): 
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