NPIDB: 1MNM structure

General information

PDB ID

1MNM

Title

YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE

PDB header

TRANSCRIPTION/DNA

Date

1997-11-03

Experimental method

X-RAY DIFFRACTION

Resolution (A)

2.25

Kind

dna

Organism

SYNTHETIC CONSTRUCT, SACCHAROMYCES CEREVISIAE


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Composition of PDB entry and biounits
File:	Protein chains:	DNA chains:	RNA chains:	No. of models:	Action:

PDB entry:

pdb1mnm.pdb	ABCD	EF		0

Biounits:

1mnm.pdb1.pdb	ABCD	EF		1

Pfam domains
Name:	Type:	Domain:	E-value:	Significance:	Clan:	Prot. chain:	Start res.:	End res.:	Nuc. chains:	Int. mode:	Action:

SRF-TF	Domain	P11746_25-72	4.8e-22	1	No_clan	A	25	72	EF	H-Bb H-Mj
SRF-TF	Domain	P11746_25-72	4.2e-22	1	No_clan	B	25	72	EF	H-Bb H-Mj L-Bb
Homeobox	Domain	P0CY08_132-189	7.4e-10	1	CL0123	C	131	189	EF	H-Bb H-Mj L-Bb L-Mn
Homeobox	Domain	P0CY08_132-189	7.4e-10	1	CL0123	D	131	189	EF	H-Bb H-Mj L-Bb L-Mn

SCOP domains
Classification:	Protein:	Prot. chain:	Start res.:	End res.:	Nuc. chains:	Int. mode:	Action:

Class: All alpha proteins Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain	mat alpha2 Homeodomain	C	N/A	N/A	EF	H-Bb H-Mj L-Bb L-Mn
Class: All alpha proteins Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain	mat alpha2 Homeodomain	D	N/A	N/A	EF	H-Bb H-Mj L-Bb L-Mn
Class: Alpha and beta proteins (a+b) Fold: SRF-like Superfamily: SRF-like Family: SRF-like	MCM1 transcriptional regulator	A	N/A	N/A	EF	H-Bb H-Mj L-Bb L-Mn
Class: Alpha and beta proteins (a+b) Fold: SRF-like Superfamily: SRF-like Family: SRF-like	MCM1 transcriptional regulator	B	N/A	N/A	EF	H-Bb H-Mj L-Bb

GO terms
Protein chains:	GO type:	GO description:
A/B=1-100	C	nuclear chromatin
A/B=1-100	F	DNA replication origin binding
A/B=1-100	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
A/B=1-100	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
A/B=1-100	F	sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity
A/B=1-100	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding, bending
A/B=1-100	P	DNA-dependent DNA replication initiation
A/B=1-100	P	negative regulation of arginine catabolic process by negative regulation of transcription from RNA polymerase II promoter
A/B=1-100	P	negative regulation of mating-type specific transcription from RNA polymerase II promoter
A/B=1-100	P	regulation of mating type switching
A/B=1-100	P	arginine metabolic process
A/B=1-100	P	positive regulation of arginine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter
A/B=1-100	P	positive regulation of transcription involved in G2/M-phase of mitotic cell cycle
A/B=1-100	P	positive regulation of mating-type specific transcription from RNA polymerase II promoter
C/D=103-189	C	nucleus
C/D=103-189	F	sequence-specific DNA binding transcription factor activity
C/D=103-189	F	sequence-specific DNA binding
C/D=103-189	P	transcription, DNA-dependent
C/D=103-189	P	donor selection

Sequences

Download file with secondary structure created by Stride

1mnm.pdb1.pdb: [ download sequences in FASTA format ]

E (dna):