General information
PDB ID 1N6J
Title STRUCTURAL BASIS OF SEQUENCE-SPECIFIC RECRUITMENT OF HISTONE DEACETYLASES BY MYOCYTE ENHANCER FACTOR-2
PDB header TRANSCRIPTION/DNA
Date 2002-11-11
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.2
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1n6j.pdb ABG CD 2
Biounits:
1n6j.pdb1.pdb ABG CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
SRF-TF Domain Q02080_10-57 2.7e-24 1 No_clan A 10 57 CD  H-Bb H-Mj 
SRF-TF Domain Q02080_10-57 2.5e-24 1 No_clan B 10 57 CD  H-Bb H-Mj 
MEF2_binding Domain Q9Y6J0_2159-2184 4.6e-18 1 No_clan G 101 126   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: SRF-like
    Superfamily: SRF-like
      Family: SRF-like
Myocyte enhancer factor Mef2b core A N/A N/A CD  H-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: SRF-like
    Superfamily: SRF-like
      Family: SRF-like
Myocyte enhancer factor Mef2b core B N/A N/A CD  H-Bb H-Mj L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
A/B=2-94 C cell junction
A/B=2-94 C cytosol
A/B=2-94 C nuclear chromatin
A/B=2-94 C nucleoplasm
A/B=2-94 C nucleus
A/B=2-94 C transcription regulator complex
A/B=2-94 F DNA-binding transcription activator activity, RNA polymerase II-specific
A/B=2-94 F DNA-binding transcription factor activity
A/B=2-94 F DNA-binding transcription factor activity, RNA polymerase II-specific
A/B=2-94 F histone deacetylase binding
A/B=2-94 F protein dimerization activity
A/B=2-94 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/B=2-94 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
A/B=2-94 F sequence-specific DNA binding
A/B=2-94 F sequence-specific double-stranded DNA binding
A/B=2-94 F transcription factor binding
A/B=2-94 F transcription regulatory region sequence-specific DNA binding
A/B=2-94 P cell differentiation
A/B=2-94 P muscle organ development
A/B=2-94 P positive regulation of transcription by RNA polymerase II
G=2156-2190 C aggresome
G=2156-2190 C cytosol
G=2156-2190 C nucleoplasm
G=2156-2190 C nucleus
G=2156-2190 F protein phosphatase inhibitor activity
G=2156-2190 P cell surface receptor signaling pathway
G=2156-2190 P DNA replication-independent nucleosome assembly
Sequences
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1n6j.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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G (protein): 
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