General information
PDB ID 1NJP
Title THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH A TRNA ACCEPTOR STEM MIMIC (ASM)
PDB header RIBOSOME
Date 2003-01-02
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.5
Kind rna
Organism DEINOCOCCUS RADIODURANS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1njp.pdb KT 05 0
Biounits:
1njp.pdb1.pdb KT 05 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_TL5_C Domain Q9RX88_91-175 3.3e-24 1 No_clan T 91 175   
Ribosomal_L25p Domain Q9RX88_3-83 0.000000000076 1 No_clan T 3 83   
Ribosomal_L16 Family Q9RXJ5_7-130 5.5e-48 1 No_clan K 8 131   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit K N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit T N/A N/A -
GO terms
Protein chains: GO type: GO description:
K=1-141 F rRNA binding
T=1-237 C ribosome
T=1-237 F 5S rRNA binding
T=1-237 F tRNA binding
T=1-237 F structural constituent of ribosome
T=1-237 P translation
Sequences
Download file with secondary structure created by Stride  
1njp.pdb1.pdb:   [ download sequences in FASTA format ]
K (protein): 
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T (protein): 
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0 (rna): 
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5 (rna): 
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