General information
PDB ID 1NK3
Title VND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, MINIMIZED AVERAGE STRUCTURE
PDB header DNA BINDING PROTEIN/DNA
Date 1998-05-06
Experimental method SOLUTION NMR
Resolution (A) N/A
Kind dna
Organism DROSOPHILA MELANOGASTER
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CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1nk3.pdb P AB 0
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Homeodomain Domain P22808_546-602 1.1e-20 1 CL0123 P 102 158 A  H-Bb H-Mj 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
VND/NK-2 protein P N/A N/A  H-Bb H-Mj L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
P=538-613 C nucleus
P=538-613 F DNA-binding transcription factor activity
P=538-613 F DNA-binding transcription factor activity, RNA polymerase II-specific
P=538-613 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
P=538-613 F sequence-specific DNA binding
P=538-613 F transcription factor binding
P=538-613 P brain development
P=538-613 P cell differentiation
P=538-613 P glial cell development
P=538-613 P negative regulation of gene expression
P=538-613 P negative regulation of transcription by RNA polymerase II
P=538-613 P neuroblast development
P=538-613 P neuroblast fate determination
P=538-613 P positive regulation of transcription by RNA polymerase II
P=538-613 P regulation of transcription by RNA polymerase II
Sequences
Download file with secondary structure created by Stride  
pdb1nk3.pdb:   [ download sequences in FASTA format ]
A (dna): 
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B (dna): 
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P (protein): 
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