General information
PDB ID 1OUP
Title CRYSTAL STRUCTURE OF THE PERIPLASMIC ENDONUCLEASE VVN COMPLEXED WITH OCTAMER DOUBLE STRANDED DNA
PDB header HYDROLASE/DNA
Date 2003-03-25
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.3
Kind dna
Organism VIBRIO VULNIFICUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1oup.pdb AB CDEGF 0
Biounits:
1oup.pdb1.pdb B CD 1
1oup.pdb2.pdb A EGF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Endonuclease_1 Family Q7MHK3_23-228 3.7e-47 1 CL0263 A 24 228 EFG  H-Bb L-Bb 
Endonuclease_1 Family Q7MHK3_23-228 3.5e-47 1 CL0263 B 24 228 CD  H-Bb S-Bb L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: His-Me finger endonucleases
    Superfamily: His-Me finger endonucleases
      Family: Endonuclease I
Periplasmic endonuclease Vvn A N/A N/A EFG -
Class: Alpha and beta proteins (a+b)
  Fold: His-Me finger endonucleases
    Superfamily: His-Me finger endonucleases
      Family: Endonuclease I
Periplasmic endonuclease Vvn B N/A N/A CD -
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
1oup.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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B (protein): 
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1oup.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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G (dna): 
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A (protein): 
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