General information
PDB ID 1PGL
Title BEAN POD MOTTLE VIRUS (BPMV), MIDDLE COMPONENT
PDB header VIRUS/RNA
Date 2003-05-28
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.8
Kind rna
Organism
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CATH PDBsum HSSP PDBePISA UniProt
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1pgl.pdb 12 3 0
Biounits:
1pgl.pdb1.pdb 12 3 60
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
Como_SCP Domain 9.9e-86 1 CL0055 1 1 184
Como_LCP Domain 4.3e-191 1 CL0055 2 1 370 3
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Comoviridae-like VP
Comovirus coat proteins (VP37 and VP23) 1 1 185 -
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Comoviridae-like VP
Comovirus coat proteins (VP37 and VP23) 2 1 182 3 -
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Comoviridae-like VP
Comovirus coat proteins (VP37 and VP23) 2 183 370 3 -
GO terms
Protein chains: GO type: GO description:
1=821-1005, 2=447-816 C viral capsid
1=821-1005, 2=447-816 C host cell plasmodesma
1=821-1005, 2=447-816 F RNA binding
1=821-1005, 2=447-816 F DNA binding
1=821-1005, 2=447-816 F GTP binding
1=821-1005, 2=447-816 F structural molecule activity
1=821-1005, 2=447-816 P spread of virus in host, cell to cell
1=821-1005, 2=447-816 P transport
Sequences
Download file with secondary structure created by Stride  
1pgl.pdb1.pdb:   [ download sequences in FASTA format ]
1 (protein): 
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2 (protein): 
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3 (rna): 
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