General information
PDB ID 1PJI
Title CRYSTAL STRUCTURE OF WILD TYPE LACTOCOCCUS LACTIS FPG COMPLEXED TO A 1,3 PROPANEDIOL CONTAINING DNA
PDB header HYDROLASE/DNA
Date 2003-06-03
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.9
Kind dna
Organism LACTOCOCCUS LACTIS SUBSP. CREMORIS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1pji.pdb A DE 0
Biounits:
1pji.pdb1.pdb A DE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
H2TH Domain P42371_132-225 8.7e-32 1 CL0303 A 131 225 DE   
Fapy_DNA_glyco Domain P42371_2-115 1e-28 1 No_clan A 1 114 DE   
zf-FPG_IleRS Domain P42371_244-273 0.000000000006 1 CL0167 A 242 271 D   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: S13-like H2TH domain
    Superfamily: S13-like H2TH domain
      Family: Middle domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) A 132 218 DE  H-Bb 
Class: All beta proteins
  Fold: N-terminal domain of MutM-like DNA repair proteins
    Superfamily: N-terminal domain of MutM-like DNA repair proteins
      Family: N-terminal domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) A 1 131 DE  H-Bb S-Bb L-Bb L-Mj L-Mn 
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) A 223 271 D  S-Bb 
GO terms
Protein chains: GO type: GO description:
A=2-273 F damaged DNA binding
A=2-273 F zinc ion binding
A=2-273 F oxidized purine nucleobase lesion DNA N-glycosylase activity
A=2-273 P base-excision repair
A=2-273 P nucleotide-excision repair
Sequences
Download file with secondary structure created by Stride  
1pji.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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E (dna): 
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A (protein): 
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