General information
PDB ID 1PP8
Title CRYSTAL STRUCTURE OF THE T. VAGINALIS IBP39 INITIATOR BINDING DOMAIN (IBD) BOUND TO THE ALPHA-SCS INR ELEMENT
PDB header TRANSCRIPTION/DNA
Date 2003-06-16
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.05
Kind dna
Organism TRICHOMONAS VAGINALIS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1pp8.pdb UPFVMO EIYKTRJG 0
Biounits:
1pp8.pdb1.pdb F KJ 1
1pp8.pdb2.pdb M YR 1
1pp8.pdb3.pdb U EG 1
1pp8.pdb4.pdb P IT 1
1pp8.pdb5.pdb V 1
1pp8.pdb6.pdb O 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
IBD Domain Q95VR4_5-112 7.2e-20 1 CL0123 F 5 112 JK  H-Bb H-Mj S-Bb L-Bb 
IBD Domain Q95VR4_5-112 8.5e-20 1 CL0123 M 5 112 RY  H-Bb H-Mj L-Bb L-Mn 
IBD Domain Q95VR4_10-112 1.5e-16 1 CL0123 O 20 112   
IBD Domain Q95VR4_5-112 8.5e-20 1 CL0123 P 5 112 IT  H-Bb H-Mj L-Bb L-Mn 
IBD Domain Q95VR4_5-112 6.7e-20 1 CL0123 U 5 112 EG  H-Bb H-Mj S-Bb L-Bb 
IBD Domain Q95VR4_10-112 1.6e-16 1 CL0123 V 20 112   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: 39 kda initiator binding protein, IBP39, N-terminal domain
39 kda initiator binding protein, IBP39, N-terminal domain F N/A N/A JK  H-Bb H-Mj S-Bb L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: 39 kda initiator binding protein, IBP39, N-terminal domain
39 kda initiator binding protein, IBP39, N-terminal domain M N/A N/A RY  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: 39 kda initiator binding protein, IBP39, N-terminal domain
39 kda initiator binding protein, IBP39, N-terminal domain U N/A N/A EG  H-Bb H-Mj S-Bb L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: 39 kda initiator binding protein, IBP39, N-terminal domain
39 kda initiator binding protein, IBP39, N-terminal domain P N/A N/A IT  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: 39 kda initiator binding protein, IBP39, N-terminal domain
39 kda initiator binding protein, IBP39, N-terminal domain V N/A N/A -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: 39 kda initiator binding protein, IBP39, N-terminal domain
39 kda initiator binding protein, IBP39, N-terminal domain O N/A N/A -
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
1pp8.pdb1.pdb:   [ download sequences in FASTA format ]
J (dna): 
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K (dna): 
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F (protein): 
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1pp8.pdb2.pdb:   [ download sequences in FASTA format ]
R (dna): 
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Y (dna): 
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M (protein): 
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1pp8.pdb3.pdb:   [ download sequences in FASTA format ]
E (dna): 
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G (dna): 
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U (protein): 
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1pp8.pdb4.pdb:   [ download sequences in FASTA format ]
I (dna): 
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T (dna): 
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P (protein): 
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1pp8.pdb5.pdb:   [ download sequences in FASTA format ]
V (protein): 
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1pp8.pdb6.pdb:   [ download sequences in FASTA format ]
O (protein): 
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