General information
PDB ID 1PV4
Title X-RAY CRYSTAL STRUCTURE OF THE RHO TRANSCRIPTION TERMINATION FACTOR IN COMPLEX WITH SINGLE STRANDED DNA
PDB header TRANSCRIPTION/DNA
Date 2003-06-26
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind dna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1pv4.pdb ABCDEF GHJKL 0
Biounits:
1pv4.pdb1.pdb ABCDEF GHJKL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Rho_RNA_bind Domain P0AG30_51-125 2.8e-32 1 CL0021 A 51 125 G   
ATP-synt_ab Domain P0AG30_158-365 3.6e-17 1 CL0023 A 158 365   
Rho_RNA_bind Domain P0AG30_51-125 2.2e-32 1 CL0021 B 51 125   
ATP-synt_ab Domain P0AG30_158-365 2.6e-17 1 CL0023 B 158 365   
Rho_RNA_bind Domain P0AG30_51-125 2.8e-32 1 CL0021 C 51 125 H   
ATP-synt_ab Domain P0AG30_158-365 3.6e-17 1 CL0023 C 158 365   
Rho_RNA_bind Domain P0AG30_51-125 2.8e-32 1 CL0021 D 51 125 J   
ATP-synt_ab Domain P0AG30_158-365 3.6e-17 1 CL0023 D 158 365   
Rho_RNA_bind Domain P0AG30_51-125 2.7e-32 1 CL0021 E 51 125 K   
ATP-synt_ab Domain P0AG30_158-365 2.1e-17 1 CL0023 E 158 365   
Rho_RNA_bind Domain P0AG30_51-125 2.8e-32 1 CL0021 F 51 125 L   
ATP-synt_ab Domain P0AG30_158-365 3.6e-17 1 CL0023 F 158 365   
Rho_N Family P0AG30_5-47 0.0000000034 1 CL0306 A 5 47   
Rho_N Family P0AG30_5-47 0.0000000034 1 CL0306 C 5 47   
Rho_N Family P0AG30_5-47 0.0000000034 1 CL0306 D 5 47   
Rho_N Family P0AG30_5-47 0.0000000034 1 CL0306 E 5 47   
Rho_N Family P0AG30_5-47 0.0000000034 1 CL0306 F 5 47   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: LEM/SAP HeH motif
    Superfamily: Rho N-terminal domain-like
      Family: Rho termination factor, N-terminal domain
Rho termination factor, N-terminal domain A 1 47 -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Cold shock DNA-binding domain-like
Rho termination factor, RNA-binding domain A 48 126 G -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: RecA protein-like (ATPase-domain)
Transcription termination factor Rho, ATPase domain A 129 417 -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Cold shock DNA-binding domain-like
Rho termination factor, RNA-binding domain B 51 126 -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: RecA protein-like (ATPase-domain)
Transcription termination factor Rho, ATPase domain B 129 417 -
Class: All alpha proteins
  Fold: LEM/SAP HeH motif
    Superfamily: Rho N-terminal domain-like
      Family: Rho termination factor, N-terminal domain
Rho termination factor, N-terminal domain C 1 47 -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Cold shock DNA-binding domain-like
Rho termination factor, RNA-binding domain C 48 126 H -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: RecA protein-like (ATPase-domain)
Transcription termination factor Rho, ATPase domain C 129 417 -
Class: All alpha proteins
  Fold: LEM/SAP HeH motif
    Superfamily: Rho N-terminal domain-like
      Family: Rho termination factor, N-terminal domain
Rho termination factor, N-terminal domain D 1 47 -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Cold shock DNA-binding domain-like
Rho termination factor, RNA-binding domain D 48 126 J -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: RecA protein-like (ATPase-domain)
Transcription termination factor Rho, ATPase domain D 129 417 -
Class: All alpha proteins
  Fold: LEM/SAP HeH motif
    Superfamily: Rho N-terminal domain-like
      Family: Rho termination factor, N-terminal domain
Rho termination factor, N-terminal domain E 1 47 -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Cold shock DNA-binding domain-like
Rho termination factor, RNA-binding domain E 48 126 K -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: RecA protein-like (ATPase-domain)
Transcription termination factor Rho, ATPase domain E 129 417 -
Class: All alpha proteins
  Fold: LEM/SAP HeH motif
    Superfamily: Rho N-terminal domain-like
      Family: Rho termination factor, N-terminal domain
Rho termination factor, N-terminal domain F 1 47 -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Cold shock DNA-binding domain-like
Rho termination factor, RNA-binding domain F 48 126 L -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: RecA protein-like (ATPase-domain)
Transcription termination factor Rho, ATPase domain F 129 417 -
GO terms
Protein chains: GO type: GO description:
A/B/C/D/E/F=1-419 C membrane
A/B/C/D/E/F=1-419 F RNA binding
A/B/C/D/E/F=1-419 F helicase activity
A/B/C/D/E/F=1-419 F ATP binding
A/B/C/D/E/F=1-419 F RNA-dependent ATPase activity
A/B/C/D/E/F=1-419 P DNA-dependent transcription, termination
A/B/C/D/E/F=1-419 P regulation of transcription, DNA-dependent
Sequences
Download file with secondary structure created by Stride  
1pv4.pdb1.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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J (dna): 
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K (dna): 
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L (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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