General information
PDB ID 1Q9X
Title CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH TETRAHYDROFURAN CONTAINING DNA
PDB header TRANSFERASE,REPLICATION/DNA
Date 2003-08-26
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.69
Kind dna
Organism ENTEROBACTERIA PHAGE RB69
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1q9x.pdb ABCD EIFJGKHL 0
Biounits:
1q9x.pdb1.pdb A EI 1
1q9x.pdb2.pdb B FJ 1
1q9x.pdb3.pdb C GK 1
1q9x.pdb4.pdb D HL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_B Family Q38087_363-784 3.9e-28 1 CL0194 A 350 791 EI   
DNA_pol_B_exo1 Family Q38087_19-293 2.1e-26 1 CL0219 A 19 293   
DNA_pol_B Family Q38087_363-784 3.9e-28 1 CL0194 B 350 791 FJ   
DNA_pol_B_exo1 Family Q38087_19-293 2.1e-26 1 CL0219 B 19 293 J   
DNA_pol_B Family Q38087_363-784 3.9e-28 1 CL0194 C 350 791 GK   
DNA_pol_B_exo1 Family Q38087_19-293 2.1e-26 1 CL0219 C 19 293 K   
DNA_pol_B Family Q38087_363-784 3.9e-28 1 CL0194 D 350 791 HL  L-Bb L-Mn 
DNA_pol_B_exo1 Family Q38087_19-293 2.1e-26 1 CL0219 D 19 293 L  L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a/b)
  Fold: Ribonuclease H-like motif
    Superfamily: Ribonuclease H-like
      Family: DnaQ-like 3'-5' exonuclease
Exonuclease domain of family B DNA polymerases A 1 375 E -
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: DNA polymerase I
Family B DNA polymerase A 376 903 EI -
Class: Alpha and beta proteins (a/b)
  Fold: Ribonuclease H-like motif
    Superfamily: Ribonuclease H-like
      Family: DnaQ-like 3'-5' exonuclease
Exonuclease domain of family B DNA polymerases B 1 375 FJ  L-Bb 
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: DNA polymerase I
Family B DNA polymerase B 376 903 FJ -
Class: Alpha and beta proteins (a/b)
  Fold: Ribonuclease H-like motif
    Superfamily: Ribonuclease H-like
      Family: DnaQ-like 3'-5' exonuclease
Exonuclease domain of family B DNA polymerases C 1 375 GK  L-Bb 
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: DNA polymerase I
Family B DNA polymerase C 376 903 GK -
Class: Alpha and beta proteins (a/b)
  Fold: Ribonuclease H-like motif
    Superfamily: Ribonuclease H-like
      Family: DnaQ-like 3'-5' exonuclease
Exonuclease domain of family B DNA polymerases D 1 375 HL  L-Bb 
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: DNA polymerase I
Family B DNA polymerase D 376 903 HL -
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-903 F exonuclease activity
A/B/C/D=1-903 F nucleotide binding
A/B/C/D=1-903 F DNA-directed DNA polymerase activity
A/B/C/D=1-903 F DNA binding
A/B/C/D=1-903 P DNA replication
A/B/C/D=1-903 P nucleic acid phosphodiester bond hydrolysis
Sequences
Download file with secondary structure created by Stride  
1q9x.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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I (dna): 
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A (protein): 
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1q9x.pdb2.pdb:   [ download sequences in FASTA format ]
F (dna): 
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J (dna): 
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B (protein): 
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1q9x.pdb3.pdb:   [ download sequences in FASTA format ]
G (dna): 
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K (dna): 
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C (protein): 
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1q9x.pdb4.pdb:   [ download sequences in FASTA format ]
H (dna): 
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L (dna): 
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D (protein): 
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