General information
PDB ID 1QBJ
Title CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX
PDB header HYDROLASE/DNA
Date 1999-04-22
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.1
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1qbj.pdb ABC DEF 0
Biounits:
1qbj.pdb1.pdb AB DE 1
1qbj.pdb2.pdb C F 2
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
z-alpha Domain P55265_135-199 2.7e-30 1 CL0123 A 135 198 D  H-Bb H-Mj S-Bb L-Bb 
z-alpha Domain P55265_135-199 7.5e-30 1 CL0123 B 136 198 E  H-Bb H-Mj S-Bb 
z-alpha Domain P55265_135-199 1.5e-30 1 CL0123 C 135 199 F   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: Z-DNA binding domain
Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 A N/A N/A D -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: Z-DNA binding domain
Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 B N/A N/A E -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: Z-DNA binding domain
Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 C N/A N/A F -
GO terms
Protein chains: GO type: GO description:
A/B/C=133-209 C cytoplasm
A/B/C=133-209 C membrane
A/B/C=133-209 C nucleolus
A/B/C=133-209 C nucleoplasm
A/B/C=133-209 C nucleus
A/B/C=133-209 C supraspliceosomal complex
A/B/C=133-209 F DNA binding
A/B/C=133-209 F double-stranded RNA adenosine deaminase activity
A/B/C=133-209 F double-stranded RNA binding
A/B/C=133-209 F metal ion binding
A/B/C=133-209 F RNA binding
A/B/C=133-209 F tRNA-specific adenosine deaminase activity
A/B/C=133-209 P adenosine to inosine editing
A/B/C=133-209 P base conversion or substitution editing
A/B/C=133-209 P cellular response to virus
A/B/C=133-209 P defense response to virus
A/B/C=133-209 P definitive hemopoiesis
A/B/C=133-209 P erythrocyte differentiation
A/B/C=133-209 P hematopoietic progenitor cell differentiation
A/B/C=133-209 P hematopoietic stem cell homeostasis
A/B/C=133-209 P innate immune response
A/B/C=133-209 P miRNA loading onto RISC involved in gene silencing by miRNA
A/B/C=133-209 P mRNA processing
A/B/C=133-209 P negative regulation of apoptotic process
A/B/C=133-209 P negative regulation of protein kinase activity by regulation of protein phosphorylation
A/B/C=133-209 P negative regulation of RNA interference
A/B/C=133-209 P negative regulation of type I interferon-mediated signaling pathway
A/B/C=133-209 P osteoblast differentiation
A/B/C=133-209 P positive regulation of viral genome replication
A/B/C=133-209 P pre-miRNA processing
A/B/C=133-209 P protein export from nucleus
A/B/C=133-209 P protein import into nucleus
A/B/C=133-209 P response to interferon-alpha
A/B/C=133-209 P response to virus
A/B/C=133-209 P RNA processing
A/B/C=133-209 P somatic diversification of immune receptors via somatic mutation
A/B/C=133-209 P type I interferon signaling pathway
Sequences
Download file with secondary structure created by Stride  
1qbj.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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E (dna): 
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A (protein): 
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B (protein): 
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1qbj.pdb2.pdb:   [ download sequences in FASTA format ]
F (dna): 
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C (protein): 
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