NPIDB: 1QN7 structure

General information

PDB ID

1QN7

Title

CRYSTAL STRUCTURE OF THE T(-27) ADENOVIRUS MAJOR LATE PROMOTER TATA BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION.

PDB header

TATA BOX-BINDING PROTEIN (TBP)

Date

1999-10-14

Experimental method

X-RAY DIFFRACTION

Resolution (A)

2.3

Kind

dna

Organism

ARABIDOPSIS THALIANA


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PDB	PDBe	MMDB	Jena	OCA
CATH	PDBsum	HSSP	PDBePISA	UniProt
ProteopediA	BIPA
		PDIdb

Composition of PDB entry and biounits
File:	Protein chains:	DNA chains:	RNA chains:	No. of models:	Action:

PDB entry:

pdb1qn7.pdb	AB	CDEF		0

Biounits:

1qn7.pdb1.pdb	A	CD		1
1qn7.pdb2.pdb	B	EF		1

Pfam domains
Name:	Type:	Domain:	E-value:	Significance:	Clan:	Prot. chain:	Start res.:	End res.:	Nuc. chains:	Int. mode:	Action:

TBP	Domain	P28147_112-195	3.7e-33	1	CL0407	A	112	195	CD	S-Bb S-Mj S-Mn L-Bb
TBP	Domain	P28147_22-104	9.7e-32	1	CL0407	A	22	104	CD	S-Bb S-Mn L-Bb L-Mj L-Mn
TBP	Domain	P28147_112-195	3.7e-33	1	CL0407	B	112	195	EF	S-Bb S-Mn L-Bb L-Mj L-Mn
TBP	Domain	P28147_22-104	9.7e-32	1	CL0407	B	22	104	EF	S-Bb S-Mn L-Bb L-Mj L-Mn

SCOP domains
Classification:	Protein:	Prot. chain:	Start res.:	End res.:	Nuc. chains:	Int. mode:	Action:

Class: Alpha and beta proteins (a+b) Fold: TBP-like Superfamily: TATA-box binding protein-like Family: TATA-box binding protein (TBP), C-terminal domain	TATA-box binding protein (TBP), C-terminal domain	A	13	115	CD	S-Bb S-Mn L-Bb L-Mn
Class: Alpha and beta proteins (a+b) Fold: TBP-like Superfamily: TATA-box binding protein-like Family: TATA-box binding protein (TBP), C-terminal domain	TATA-box binding protein (TBP), C-terminal domain	A	116	198	CD	S-Bb S-Mn L-Bb
Class: Alpha and beta proteins (a+b) Fold: TBP-like Superfamily: TATA-box binding protein-like Family: TATA-box binding protein (TBP), C-terminal domain	TATA-box binding protein (TBP), C-terminal domain	B	12	115	EF	S-Bb S-Mn L-Bb L-Mn
Class: Alpha and beta proteins (a+b) Fold: TBP-like Superfamily: TATA-box binding protein-like Family: TATA-box binding protein (TBP), C-terminal domain	TATA-box binding protein (TBP), C-terminal domain	B	116	197	EF	S-Bb S-Mn L-Bb L-Mn

GO terms
Protein chains:	GO type:	GO description:
A/B=1-200	C	nucleus
A/B=1-200	C	transcription factor TFIID complex
A/B=1-200	C	transcription regulator complex
A/B=1-200	F	DNA-binding transcription factor activity
A/B=1-200	F	RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/B=1-200	F	RNA polymerase II core promoter sequence-specific DNA binding
A/B=1-200	F	transcription factor binding
A/B=1-200	P	DNA-templated transcription, initiation
A/B=1-200	P	transcription by RNA polymerase II

Sequences

Download file with secondary structure created by Stride

1qn7.pdb1.pdb: [ download sequences in FASTA format ]

C (dna):