General information
PDB ID 1QNC
Title CRYSTAL STRUCTURE OF THE A(-31) ADENOVIRUS MAJOR LATE PROMOTER TATA BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION.
PDB header TATA BOX-BINDING PROTEIN (TBP)
Date 1999-10-14
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.3
Kind dna
Organism ARABIDOPSIS THALIANA
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1qnc.pdb AB CDEF 0
Biounits:
1qnc.pdb1.pdb A CD 1
1qnc.pdb2.pdb B EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TBP Domain P28147_112-195 3.5e-33 1 CL0407 A 112 195 CD   
TBP Domain P28147_22-104 2e-31 1 CL0407 A 22 104 CD   
TBP Domain P28147_112-195 3.6e-33 1 CL0407 B 112 195 EF   
TBP Domain P28147_22-104 2.2e-31 1 CL0407 B 22 104 EF   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain A 16 115 CD  S-Bb S-Mn L-Bb 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain A 116 198 CD  S-Bb S-Mn L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain B 12 115 EF  S-Bb S-Mn L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain B 116 198 EF  S-Bb S-Mn L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
A/B=1-200 C nucleus
A/B=1-200 F DNA binding
A/B=1-200 P transcription initiation from RNA polymerase II promoter
A/B=1-200 P regulation of transcription, DNA-dependent
Sequences
Download file with secondary structure created by Stride  
1qnc.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
1qnc.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
Click "SHOW" for view sequence
F (dna): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text