General information
PDB ID 1R71
Title CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF KORB IN COMPLEX WITH THE OPERATOR DNA
PDB header TRANSCRIPTION/DNA
Date 2003-10-17
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.2
Kind dna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1r71.pdb ABCD EIFJGLHK 0
Biounits:
1r71.pdb1.pdb AB EIFJ 1
1r71.pdb2.pdb CD GLHK 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
KorB Domain P07674_166-252 2.5e-16 1 CL0123 A 166 252 EFIJ  H-Bb H-Mj L-Bb L-Mj 
KorB Domain P07674_166-252 2.6e-16 1 CL0123 B 166 252 EFIJ  H-Bb H-Mj L-Bb 
KorB Domain P07674_166-252 3e-16 1 CL0123 C 166 251 GHKL  H-Bb H-Mj L-Bb L-Mj 
KorB Domain P07674_166-252 2.6e-16 1 CL0123 D 166 252 GHKL  H-Bb H-Mj L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: KorB DNA-binding domain-like
      Family: KorB DNA-binding domain-like
Transcriptional repressor protein KorB DNA-binding domain A N/A N/A EFIJ -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: KorB DNA-binding domain-like
      Family: KorB DNA-binding domain-like
Transcriptional repressor protein KorB DNA-binding domain B N/A N/A EFIJ -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: KorB DNA-binding domain-like
      Family: KorB DNA-binding domain-like
Transcriptional repressor protein KorB DNA-binding domain C N/A N/A GHKL -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: KorB DNA-binding domain-like
      Family: KorB DNA-binding domain-like
Transcriptional repressor protein KorB DNA-binding domain D N/A N/A GHKL -
GO terms
Protein chains: GO type: GO description:
A/B/C/D=117-294 F DNA binding
A/B/C/D=117-294 P negative regulation of transcription, DNA-dependent
A/B/C/D=117-294 P transcription, DNA-dependent
Sequences
Download file with secondary structure created by Stride  
1r71.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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1r71.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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K (dna): 
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L (dna): 
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C (protein): 
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D (protein): 
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