General information
PDB ID 1RM1
Title STRUCTURE OF A YEAST TFIIA/TBP/TATA-BOX DNA COMPLEX
PDB header TRANSCRIPTION/DNA
Date 2003-11-26
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.5
Kind dna
Organism SACCHAROMYCES CEREVISIAE
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1rm1.pdb ABC DE 0
Biounits:
1rm1.pdb1.pdb ABC DE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TBP Domain P13393_154-237 4.3e-33 1 CL0407 A 154 237 DE  S-Bb S-Mj S-Mn L-Bb 
TBP Domain P13393_64-146 1.3e-32 1 CL0407 A 64 146 DE  S-Bb S-Mn L-Bb L-Mn 
TFIIA_gamma_C Domain P32774_61-118 2.5e-24 1 No_clan B 56 118   
TFIIA_gamma_N Domain P32774_6-53 1.2e-22 1 No_clan B 6 53   
TFIIA Family P32773_228-285 5.7e-23 1 No_clan C 61 285 DE  S-Bb L-Bb 
TFIIA Family P32773_9-61 2e-18 1 No_clan C 9 230   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain A 61 155 DE  S-Bb S-Mn L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain A 156 240 DE  S-Bb S-Mn L-Bb 
Class: All alpha proteins
  Fold: Transcription factor IIA (TFIIA), alpha-helical domain
    Superfamily: Transcription factor IIA (TFIIA), alpha-helical domain
      Family: Transcription factor IIA (TFIIA), alpha-helical domain
Small chain TOA2, N-terminal domain B 5 54 -
Class: All beta proteins
  Fold: Transcription factor IIA (TFIIA), beta-barrel domain
    Superfamily: Transcription factor IIA (TFIIA), beta-barrel domain
      Family: Transcription factor IIA (TFIIA), beta-barrel domain
Small chain TOA2, C-terminal domain B 55 120 -
GO terms
Protein chains: GO type: GO description:
A=1-240 C transcription factor TFIIIB complex
A=1-240 C transcription factor TFIID complex
A=1-240 F RNA polymerase III regulatory region DNA binding
A=1-240 F DNA binding, bending
A=1-240 F RNA polymerase II core promoter sequence-specific DNA binding
A=1-240 F chromatin binding
A=1-240 F TFIIIB-type transcription factor activity
A=1-240 F RNA polymerase I transcription factor recruiting transcription factor activity
A=1-240 F RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly
A=1-240 P RNA polymerase III transcriptional preinitiation complex assembly
A=1-240 P transcription of nuclear large rRNA transcript from RNA polymerase I promoter
A=1-240 P transposon integration
B=1-122 P regulation of transcription, DNA-dependent
C=1-286 C cytoplasm
C=1-286 C transcription factor TFIIA complex
C=1-286 P RNA polymerase II transcriptional preinitiation complex assembly
Sequences
Download file with secondary structure created by Stride  
1rm1.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
Click "SHOW" for view sequence
E (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text