General information
PDB ID 1RUN
Title CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
PDB header TRANSCRIPTION/DNA
Date 1996-05-26
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.7
Kind dna
Organism ESCHERICHIA COLI
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1run.pdb AB CDEF 0
Biounits:
1run.pdb1.pdb AB CDEF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
cNMP_binding Domain P0ACJ8_21-110 5.9e-24 1 CL0029 A 20 109 F   
Crp Domain 0.0000000000000017 1 CL0123 A 165 196 CF
cNMP_binding Domain P0ACJ8_21-110 5.6e-24 1 CL0029 B 20 109   
Crp Domain 0.0000000000000016 1 CL0123 B 165 196 DE
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: CAP C-terminal domain-like
Catabolite gene activator protein (CAP), C-terminal domain A 138 209 CF  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: CAP C-terminal domain-like
Catabolite gene activator protein (CAP), C-terminal domain B 138 205 DE  H-Bb H-Mj L-Bb 
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: cAMP-binding domain-like
      Family: cAMP-binding domain
Catabolite gene activator protein, N-terminal domain A 9 137 F -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: cAMP-binding domain-like
      Family: cAMP-binding domain
Catabolite gene activator protein, N-terminal domain B 9 137 -
GO terms
Protein chains: GO type: GO description:
A/B=2-210 C intracellular
A/B=2-210 F cAMP binding
A/B=2-210 F DNA binding
A/B=2-210 F sequence-specific DNA binding transcription factor activity
A/B=2-210 P transcription, DNA-dependent
Sequences
Download file with secondary structure created by Stride  
1run.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
E (dna): 
Click "SHOW" for view sequence
F (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text