General information
PDB ID 1RY1
Title STRUCTURE OF THE SIGNAL RECOGNITION PARTICLE INTERACTING WITH THE ELONGATION-ARRESTED RIBOSOME
PDB header TRANSLATION
Date 2003-12-19
Experimental method ELECTRON MICROSCOPY
Resolution (A) 12
Kind rna
Organism CANIS LUPUS FAMILIARIS, TRITICUM AESTIVUM
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1ry1.pdb CDBUWS EAMNOPQR 0
Biounits:
1ry1.pdb1.pdb CDBUWS EAMNOPQR 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
SRP9-21 Domain P49458_5-73 1.1e-11 1 CL0623 C 5 73 EM   
SRP14 Domain P37108_4-94 1.2e-22 1 CL0623 D 4 94 E   
SRP54 Domain O07347_98-293 1.8e-68 1 CL0023 U 98 293   
SRP54_N Domain O07347_5-82 3.6e-19 1 No_clan U 5 82   
SRP_SPB Domain P14576_326-431 4.9e-32 1 No_clan W 326 431 A   
SRP19 Family P09132_17-115 1.3e-29 1 No_clan B 17 115 A   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Low resolution protein structures
  Fold: Signal recognition particle (SRP) complex
    Superfamily: Signal recognition particle (SRP) complex
      Family: Signal recognition particle (SRP) complex
Signal recognition particle (SRP) complex B N/A N/A A -
Class: Low resolution protein structures
  Fold: Signal recognition particle (SRP) complex
    Superfamily: Signal recognition particle (SRP) complex
      Family: Signal recognition particle (SRP) complex
Signal recognition particle (SRP) complex C N/A N/A EM -
Class: Low resolution protein structures
  Fold: Signal recognition particle (SRP) complex
    Superfamily: Signal recognition particle (SRP) complex
      Family: Signal recognition particle (SRP) complex
Signal recognition particle (SRP) complex D N/A N/A E -
Class: Low resolution protein structures
  Fold: Signal recognition particle (SRP) complex
    Superfamily: Signal recognition particle (SRP) complex
      Family: Signal recognition particle (SRP) complex
Signal recognition particle (SRP) complex S N/A N/A -
Class: Low resolution protein structures
  Fold: Signal recognition particle (SRP) complex
    Superfamily: Signal recognition particle (SRP) complex
      Family: Signal recognition particle (SRP) complex
Signal recognition particle (SRP) complex U N/A N/A -
Class: Low resolution protein structures
  Fold: Signal recognition particle (SRP) complex
    Superfamily: Signal recognition particle (SRP) complex
      Family: Signal recognition particle (SRP) complex
Signal recognition particle (SRP) complex W N/A N/A A -
GO terms
Protein chains: GO type: GO description:
B=14-120 C mitochondrion
B=14-120 C nucleolus
C=2-85 C signal recognition particle receptor complex
C=2-85 F signal recognition particle binding
C=2-85 F RNA binding
D=2-107 C cytosol
D=2-107 F endoplasmic reticulum signal peptide binding
D=2-107 P translation
D=2-107 P negative regulation of translational elongation
D=2-107 P response to drug
S=50-67 C Golgi apparatus
S=50-67 C photoreceptor outer segment membrane
S=50-67 C plasma membrane
S=50-67 C photoreceptor inner segment membrane
S=50-67 C integral to membrane
S=50-67 F metal ion binding
S=50-67 F photoreceptor activity
S=50-67 F G-protein coupled receptor activity
S=50-67 P phototransduction
S=50-67 P retina development in camera-type eye
S=50-67 P cellular response to light stimulus
S=50-67 P protein-chromophore linkage
S=50-67 P protein phosphorylation
S=50-67 P visual perception
U=2-295 C signal recognition particle, endoplasmic reticulum targeting
U=2-295 F 7S RNA binding
U=2-295 F nucleoside-triphosphatase activity
U=2-295 F GTP binding
U=2-295 P SRP-dependent cotranslational protein targeting to membrane
W=326-434 C nuclear speck
Sequences
Download file with secondary structure created by Stride  
1ry1.pdb1.pdb:   [ download sequences in FASTA format ]
B (protein): 
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C (protein): 
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D (protein): 
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S (protein): 
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U (protein): 
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W (protein): 
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A (rna): 
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E (rna): 
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M (rna): 
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N (rna): 
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O (rna): 
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P (rna): 
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Q (rna): 
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R (rna): 
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