General information
PDB ID 1RZR
Title CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR- PHOSPHOPROTEIN-DNA COMPLEX
PDB header TRANSCRIPTION/TRANSPORT PROTEIN/DNA
Date 2003-12-27
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.8
Kind dna
Organism BACILLUS MEGATERIUM
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1rzr.pdb GCADTLYS HREB 0
Biounits:
1rzr.pdb1.pdb GCTL HR 1
1rzr.pdb2.pdb ADYS EB 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Peripla_BP_1 Domain 1.3e-24 1 CL0144 A 60 293
LacI Domain P46828_4-49 0.0000000000000068 1 CL0123 A 4 49 BE  H-Bb H-Mj L-Bb 
Peripla_BP_1 Domain 1.3e-24 1 CL0144 C 60 293
LacI Domain P46828_4-49 0.0000000000000068 1 CL0123 C 4 49 HR  H-Bb H-Mj L-Bb L-Mj 
Peripla_BP_1 Domain 1.3e-24 1 CL0144 D 60 293
LacI Domain P46828_4-49 0.0000000000000068 1 CL0123 D 4 49 BE  H-Bb H-Mj L-Bb L-Mj 
Peripla_BP_1 Domain 1.3e-24 1 CL0144 G 60 293
LacI Domain P46828_4-49 0.0000000000000068 1 CL0123 G 4 49 HR  H-Bb H-Mj L-Bb 
PTS-HPr Domain O69250_2-83 1.3e-27 1 No_clan L 2 83   
PTS-HPr Domain O69250_2-83 1.3e-27 1 No_clan S 2 83   
PTS-HPr Domain O69250_2-83 1.3e-27 1 No_clan T 2 83   
PTS-HPr Domain O69250_2-83 1.3e-27 1 No_clan Y 2 83   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: lambda repressor-like DNA-binding domains
    Superfamily: lambda repressor-like DNA-binding domains
      Family: GalR/LacI-like bacterial regulator
Glucose-resistance amylase regulator CcpA, N-terminal domain A 1 60 BE  H-Bb H-Mj H-Mn L-Bb 
Class: Alpha and beta proteins (a/b)
  Fold: Periplasmic binding protein-like I
    Superfamily: Periplasmic binding protein-like I
      Family: L-arabinose binding protein-like
Glucose-resistance amylase regulator CcpA, C-terminal domain A 61 332 -
Class: All alpha proteins
  Fold: lambda repressor-like DNA-binding domains
    Superfamily: lambda repressor-like DNA-binding domains
      Family: GalR/LacI-like bacterial regulator
Glucose-resistance amylase regulator CcpA, N-terminal domain C 1 60 HR  H-Bb H-Mj H-Mn L-Bb L-Mj 
Class: Alpha and beta proteins (a/b)
  Fold: Periplasmic binding protein-like I
    Superfamily: Periplasmic binding protein-like I
      Family: L-arabinose binding protein-like
Glucose-resistance amylase regulator CcpA, C-terminal domain C 61 332 -
Class: All alpha proteins
  Fold: lambda repressor-like DNA-binding domains
    Superfamily: lambda repressor-like DNA-binding domains
      Family: GalR/LacI-like bacterial regulator
Glucose-resistance amylase regulator CcpA, N-terminal domain D 1 60 BE  H-Bb H-Mj H-Mn L-Bb L-Mj 
Class: Alpha and beta proteins (a/b)
  Fold: Periplasmic binding protein-like I
    Superfamily: Periplasmic binding protein-like I
      Family: L-arabinose binding protein-like
Glucose-resistance amylase regulator CcpA, C-terminal domain D 61 332 -
Class: All alpha proteins
  Fold: lambda repressor-like DNA-binding domains
    Superfamily: lambda repressor-like DNA-binding domains
      Family: GalR/LacI-like bacterial regulator
Glucose-resistance amylase regulator CcpA, N-terminal domain G 1 60 HR  H-Bb H-Mj H-Mn L-Bb L-Mj 
Class: Alpha and beta proteins (a/b)
  Fold: Periplasmic binding protein-like I
    Superfamily: Periplasmic binding protein-like I
      Family: L-arabinose binding protein-like
Glucose-resistance amylase regulator CcpA, C-terminal domain G 61 332 -
Class: Alpha and beta proteins (a+b)
  Fold: HPr-like
    Superfamily: HPr-like
      Family: HPr-like
Histidine-containing phosphocarrier protein (HPr) L N/A N/A -
Class: Alpha and beta proteins (a+b)
  Fold: HPr-like
    Superfamily: HPr-like
      Family: HPr-like
Histidine-containing phosphocarrier protein (HPr) S N/A N/A -
Class: Alpha and beta proteins (a+b)
  Fold: HPr-like
    Superfamily: HPr-like
      Family: HPr-like
Histidine-containing phosphocarrier protein (HPr) T N/A N/A -
Class: Alpha and beta proteins (a+b)
  Fold: HPr-like
    Superfamily: HPr-like
      Family: HPr-like
Histidine-containing phosphocarrier protein (HPr) Y N/A N/A -
GO terms
Protein chains: GO type: GO description:
A/C/D/G=1-332 C intracellular
A/C/D/G=1-332 F DNA binding
A/C/D/G=1-332 F sequence-specific DNA binding transcription factor activity
A/C/D/G=1-332 P transcription, DNA-dependent
L/S/T/Y=1-88 C cytoplasm
L/S/T/Y=1-88 F sugar:hydrogen symporter activity
L/S/T/Y=1-88 F kinase activity
L/S/T/Y=1-88 P regulation of transcription, DNA-dependent
L/S/T/Y=1-88 P phosphoenolpyruvate-dependent sugar phosphotransferase system
Sequences
Download file with secondary structure created by Stride  
1rzr.pdb1.pdb:   [ download sequences in FASTA format ]
H (dna): 
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R (dna): 
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C (protein): 
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G (protein): 
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L (protein): 
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T (protein): 
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1rzr.pdb2.pdb:   [ download sequences in FASTA format ]
B (dna): 
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E (dna): 
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A (protein): 
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D (protein): 
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S (protein): 
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Y (protein): 
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