General information
PDB ID 1S9F
Title DPO WITH AT MATCHED
PDB header TRANSFERASE/DNA
Date 2004-02-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 2
Kind dna
Organism SULFOLOBUS SOLFATARICUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1s9f.pdb ABCD EIFJGKHL 0
Biounits:
1s9f.pdb1.pdb A EI 1
1s9f.pdb2.pdb B FJ 1
1s9f.pdb3.pdb C GK 1
1s9f.pdb4.pdb D HL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
IMS Family Q97W02_6-156 4.6e-45 1 No_clan A 6 156 EI  S-Bb 
IMS Family Q97W02_6-156 4.6e-45 1 No_clan B 6 156 FJ  H-Bb S-Bb L-Bb 
IMS Family Q97W02_6-156 4.6e-45 1 No_clan C 6 156 GK  S-Bb 
IMS Family Q97W02_6-156 4.6e-45 1 No_clan D 6 156 HL  H-Bb S-Bb 
IMS_HHH Motif Q97W02_168-199 0.0000003 1 CL0198 A 168 199 E  H-Bb L-Bb 
IMS_HHH Motif Q97W02_168-199 0.0000003 1 CL0198 B 168 199 F  H-Bb L-Bb 
IMS_HHH Motif Q97W02_168-199 0.0000003 1 CL0198 C 168 199 G  H-Bb L-Bb 
IMS_HHH Motif Q97W02_168-199 0.0000003 1 CL0198 D 168 199 H  H-Bb L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: Lesion bypass DNA polymerase (Y-family), little finger domain
    Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain
      Family: Lesion bypass DNA polymerase (Y-family), little finger domain
DinB homolog (DBH) A 241 341 EI -
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: Lesion bypass DNA polymerase (Y-family), catalytic domain
DinB homolog (DBH) A 2 240 EI -
Class: Alpha and beta proteins (a+b)
  Fold: Lesion bypass DNA polymerase (Y-family), little finger domain
    Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain
      Family: Lesion bypass DNA polymerase (Y-family), little finger domain
DinB homolog (DBH) B 241 341 FJ -
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: Lesion bypass DNA polymerase (Y-family), catalytic domain
DinB homolog (DBH) B 2 240 FJ -
Class: Alpha and beta proteins (a+b)
  Fold: Lesion bypass DNA polymerase (Y-family), little finger domain
    Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain
      Family: Lesion bypass DNA polymerase (Y-family), little finger domain
DinB homolog (DBH) C 241 341 GK -
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: Lesion bypass DNA polymerase (Y-family), catalytic domain
DinB homolog (DBH) C 2 240 GK -
Class: Alpha and beta proteins (a+b)
  Fold: Lesion bypass DNA polymerase (Y-family), little finger domain
    Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain
      Family: Lesion bypass DNA polymerase (Y-family), little finger domain
DinB homolog (DBH) D 241 341 HL -
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: Lesion bypass DNA polymerase (Y-family), catalytic domain
DinB homolog (DBH) D 2 240 HL -
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-352 C cytoplasm
A/B/C/D=1-352 F metal ion binding
A/B/C/D=1-352 F damaged DNA binding
A/B/C/D=1-352 F DNA-directed DNA polymerase activity
A/B/C/D=1-352 P DNA replication
A/B/C/D=1-352 P DNA repair
Sequences
Download file with secondary structure created by Stride  
1s9f.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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I (dna): 
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A (protein): 
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1s9f.pdb2.pdb:   [ download sequences in FASTA format ]
F (dna): 
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J (dna): 
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B (protein): 
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1s9f.pdb3.pdb:   [ download sequences in FASTA format ]
G (dna): 
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K (dna): 
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C (protein): 
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1s9f.pdb4.pdb:   [ download sequences in FASTA format ]
H (dna): 
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L (dna): 
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D (protein): 
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