General information
PDB ID 1SL0
Title TERNARY 3' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A DISORDERED CIS-SYN THYMINE DIMER ON THE TEMPLATE AND AN INCOMING NUCLEOTIDE
PDB header TRANSFERASE/ELECTRON TRANSPORT/DNA
Date 2004-03-05
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.2
Kind dna
Organism ENTEROBACTERIA PHAGE T7, ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1sl0.pdb ABCD PTQU 0
Biounits:
1sl0.pdb1.pdb AB PT 1
1sl0.pdb2.pdb CD QU 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Thioredoxin Domain P0AA25_4-106 1.7e-34 1 CL0172 B 3 106   
Thioredoxin Domain P0AA25_4-106 1.7e-34 1 CL0172 D 3 106   
DNA_pol_A Family P00581_316-702 1.7e-43 1 No_clan A 295 702 PT   
DNA_pol_A Family P00581_316-702 5.8e-41 1 No_clan C 295 701 QU   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a/b)
  Fold: Ribonuclease H-like motif
    Superfamily: Ribonuclease H-like
      Family: DnaQ-like 3'-5' exonuclease
Exonuclease domain of T7 DNA polymerase A 1 210 -
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: DNA polymerase I
T7 phage DNA polymerase A 211 704 PT -
Class: Alpha and beta proteins (a/b)
  Fold: Thioredoxin fold
    Superfamily: Thioredoxin-like
      Family: Thioltransferase
Thioredoxin B N/A N/A -
Class: Alpha and beta proteins (a/b)
  Fold: Ribonuclease H-like motif
    Superfamily: Ribonuclease H-like
      Family: DnaQ-like 3'-5' exonuclease
Exonuclease domain of T7 DNA polymerase C 1 210 -
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: DNA polymerase I
T7 phage DNA polymerase C 211 704 QU -
Class: Alpha and beta proteins (a/b)
  Fold: Thioredoxin fold
    Superfamily: Thioredoxin-like
      Family: Thioltransferase
Thioredoxin D N/A N/A -
GO terms
Protein chains: GO type: GO description:
A/C=1-704 F exonuclease activity
A/C=1-704 F DNA binding
A/C=1-704 F DNA-directed DNA polymerase activity
A/C=1-704 P virus-host interaction
A/C=1-704 P DNA replication
A/C=1-704 P nucleic acid phosphodiester bond hydrolysis
B/D=2-108 F protein disulfide oxidoreductase activity
B/D=2-108 F electron carrier activity
B/D=2-108 P electron transport chain
B/D=2-108 P glycerol ether metabolic process
B/D=2-108 P cell redox homeostasis
Sequences
Download file with secondary structure created by Stride  
1sl0.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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1sl0.pdb2.pdb:   [ download sequences in FASTA format ]
Q (dna): 
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U (dna): 
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C (protein): 
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D (protein): 
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