General information
PDB ID 1SM1
Title COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
PDB header RIBOSOME/ANTIBIOTIC
Date 2004-03-08
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.42
Kind rna
Organism DEINOCOCCUS RADIODURANS, STREPTOMYCES GRAMINOFACIEN
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1sm1.pdb 12345ABCDEFGHIJKLMNOPQRSTUWXYZ 09 0
Biounits:
1sm1.pdb1.pdb 12345ABCDEFGHIJKLMNOPQRSTUWXYZ 09 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L36 Domain Q9RSK0_2-36 1.9e-17 1 No_clan 4 2 36   
Ribosomal_L2_C Domain Q9RXJ9_126-251 1.7e-52 1 CL0107 A 126 251   
Ribosomal_L2 Domain Q9RXJ9_42-119 1.1e-32 1 CL0021 A 42 119   
Ribosomal_L5_C Domain Q9RXJ0_84-177 9.3e-41 1 No_clan D 84 177   
Ribosomal_L5 Domain Q9RXJ0_24-80 2.2e-25 1 CL0652 D 24 80   
Ribosomal_L6 Domain Q9RSL3_11-82 4.8e-19 1 No_clan E 11 82   
Ribosomal_L6 Domain Q9RSL3_90-165 1.3e-17 1 No_clan E 90 165   
Ribosomal_L9_N Domain Q9RY49_1-46 5.6e-21 1 No_clan F 1 46   
Ribosomal_L11_N Domain Q9RSS7_1-65 7.1e-28 1 No_clan G 8 65   
Ribosomal_L11 Domain Q9RSS7_70-138 2e-26 1 No_clan G 70 138   
Ribosomal_L14 Domain Q9RXJ2_2-133 5.2e-51 1 No_clan I 2 133   
Ribosomal_L22 Domain Q9RXJ7_26-129 5.9e-35 1 No_clan Q 26 129   
Ribosomal_TL5_C Domain Q9RX88_91-175 3.3e-24 1 No_clan T 91 175   
Ribosomal_L25p Domain Q9RX88_3-83 7.6e-11 1 No_clan T 3 83   
Ribosomal_L30 Domain Q9RSL0_1-51 3.4e-19 1 No_clan X 1 51   
Ribosomal_L33 Family Q9RSS4_8-54 2.7e-19 1 CL0167 1 8 54   
Ribosomal_L34 Family Q9RSH2_1-44 1.5e-25 1 No_clan 2 1 44   
Ribosomal_L35p Family Q9RSW6_2-62 2.7e-17 1 No_clan 3 2 62   
Ribosomal_L3 Family Q9RXK2_86-181 4.4e-16 1 CL0575 B 87 181   
Ribosomal_L4 Family Q9RXK1_19-198 9e-55 1 No_clan C 19 198   
Ribosomal_L13 Family Q9RXY1_40-164 8.4e-51 1 No_clan H 40 164   
Ribosomal_L27A Family Q9RSK9_26-142 2.7e-28 1 CL0588 J 26 142   
Ribosomal_L16 Family Q9RXJ5_7-130 5.5e-48 1 No_clan K 8 131   
Ribosomal_L17 Family Q9RSJ5_20-116 3.5e-34 1 No_clan L 20 116   
Ribosomal_L18p Family Q9RSL2_4-114 7.1e-38 1 CL0267 M 4 114   
Ribosomal_L19 Family Q9RWB4_11-120 2.1e-45 1 CL0107 N 11 120   
Ribosomal_L20 Family Q9RSW7_3-109 9.6e-46 1 No_clan O 3 109   
Ribosomal_L21p Family Q9RY64_1-98 7.7e-33 1 No_clan P 1 98   
Ribosomal_L23 Family Q9RXK0_5-90 1e-29 1 No_clan R 5 90   
ribosomal_L24 Family Q9RXJ1_51-114 7.4e-22 1 No_clan S 51 114   
KOW Family Q9RXJ1_18-49 8.7e-08 1 CL0107 S 18 49   
Ribosomal_L27 Family Q9RY65_2-81 8.7e-36 1 No_clan U 2 81   
Ribosomal_L29 Family Q9RXJ4_4-59 2.2e-17 1 CL0346 W 4 59   
Ribosomal_L31 Family Q9RW44_1-64 3.9e-23 1 No_clan Y 1 64   
Ribosomal_L32p Family P49228_5-59 4.2e-29 1 CL0167 Z 5 59   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit 1 N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit 2 N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit 3 N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit 4 N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit A N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit B N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit C N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit D N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit E N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit F N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit G N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit H N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit I N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit J N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit K N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit L N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit M N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit N N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit O N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit P N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit Q N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit R N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit S N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit T N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit U N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit W N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit X N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit Y N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit Z N/A N/A -
GO terms
Protein chains: GO type: GO description:
2=1-47 C ribosome
2=1-47 F rRNA binding
2=1-47 F structural constituent of ribosome
2=1-47 P translation
4=1-37 F metal ion binding
A=1-275 F transferase activity
D=1-180 F tRNA binding
Q=1-134 C large ribosomal subunit
R=1-95 F nucleotide binding
T=1-237 F 5S rRNA binding
Sequences
Download file with secondary structure created by Stride  
1sm1.pdb1.pdb:   [ download sequences in FASTA format ]
1 (protein): 
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2 (protein): 
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3 (protein): 
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4 (protein): 
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5 (protein): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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R (protein): 
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S (protein): 
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U (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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0 (rna): 
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9 (rna): 
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