General information
PDB ID 1UTD
Title THE STRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) BOUND TO A 63-NUCLEOTIDE RNA MOLECULE CONTAINING GAGUUU REPEATS
PDB header RNA BINDING PROTEIN
Date 2003-12-08
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.1
Kind rna
Organism BACILLUS STEAROTHERMOPHILUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1utd.pdb ABCDEFGHIJKLMNOPQRSTUV 0123456789Z 0
Biounits:
1utd.pdb1.pdb ABCDEFGHIJK 1
1utd.pdb2.pdb LMNOPQRSTUV 0123456789Z 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan A 5 73   
TrpBP Domain Q9X6J6_5-71 2.2e-41 1 No_clan B 5 73   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan C 5 73   
TrpBP Domain Q9X6J6_5-71 2.2e-41 1 No_clan D 5 73   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan E 5 73   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan F 5 73   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan G 5 73   
TrpBP Domain Q9X6J6_5-71 2.2e-41 1 No_clan H 5 73   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan I 5 73   
TrpBP Domain Q9X6J6_5-71 2.2e-41 1 No_clan J 5 73   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan K 5 73   
TrpBP Domain Q9X6J6_5-71 2.2e-41 1 No_clan L 5 73 01Z   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan M 5 73 120   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan N 5 73 123   
TrpBP Domain Q9X6J6_5-71 2.2e-41 1 No_clan O 5 73 34   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan P 5 73 453   
TrpBP Domain Q9X6J6_5-71 2.2e-41 1 No_clan Q 5 73 564   
TrpBP Domain Q9X6J6_5-71 2.2e-41 1 No_clan R 5 73 675   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan S 5 73 78   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan T 5 73 897   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan U 5 73 9Z   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan V 5 73 0Z   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) A N/A N/A -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) B N/A N/A -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) C N/A N/A -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) D N/A N/A -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) E N/A N/A -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) F N/A N/A -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) G N/A N/A -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) H N/A N/A -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) I N/A N/A -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) J N/A N/A -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) K N/A N/A -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) L N/A N/A 01Z -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) M N/A N/A 120 -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) N N/A N/A 123 -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) O N/A N/A 34 -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) P N/A N/A 453 -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) Q N/A N/A 564 -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) R N/A N/A 675 -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) S N/A N/A 78 -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) T N/A N/A 897 -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) U N/A N/A 9Z -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: TRAP-like
      Family: Trp RNA-binding attenuation protein (TRAP)
Trp RNA-binding attenuation protein (TRAP) V N/A N/A 0Z -
GO terms
Protein chains: GO type: GO description:
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V=1-74 F RNA binding
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V=1-74 P DNA-dependent transcription, termination
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V=1-74 P regulation of transcription, DNA-dependent
Sequences
Download file with secondary structure created by Stride  
1utd.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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1utd.pdb2.pdb:   [ download sequences in FASTA format ]
L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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0 (rna): 
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1 (rna): 
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2 (rna): 
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3 (rna): 
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4 (rna): 
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5 (rna): 
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6 (rna): 
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7 (rna): 
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8 (rna): 
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9 (rna): 
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Z (rna): 
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