General information
PDB ID 1VOL
Title TFIIB (HUMAN CORE DOMAIN)/TBP (A.THALIANA)/TATA ELEMENT TERNARY COMPLEX
PDB header TRANSCRIPTION/DNA
Date 1996-04-29
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.7
Kind dna
Organism HOMO SAPIENS, ARABIDOPSIS THALIANA
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1vol.pdb AB CD 0
Biounits:
1vol.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TFIIB Domain Q00403_215-285 2.2e-24 1 CL0065 A 215 285 D  H-Bb L-Bb 
TFIIB Domain Q00403_121-191 3.8e-23 1 CL0065 A 121 191 C  H-Bb 
TBP Domain P28147_112-195 3.6e-33 1 CL0407 B 112 195 CD  S-Bb S-Mn L-Bb L-Mj L-Mn 
TBP Domain P28147_22-104 2.2e-31 1 CL0407 B 22 104 CD  S-Bb S-Mn L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: Cyclin-like
    Superfamily: Cyclin-like
      Family: Transcription factor IIB (TFIIB), core domain
Transcription factor IIB (TFIIB), core domain A 113 207 C  H-Bb 
Class: All alpha proteins
  Fold: Cyclin-like
    Superfamily: Cyclin-like
      Family: Transcription factor IIB (TFIIB), core domain
Transcription factor IIB (TFIIB), core domain A 208 316 D  H-Bb L-Bb 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain B 12 115 CD  S-Bb S-Mn L-Bb 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain B 116 198 CD  S-Bb S-Mn L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
A=113-316 C nucleoplasm
A=113-316 F zinc ion binding
A=113-316 F translation initiation factor activity
A=113-316 F DNA binding
A=113-316 P regulation of transcription, DNA-dependent
A=113-316 P transcription initiation from RNA polymerase II promoter
A=113-316 P virus-host interaction
A=113-316 P viral reproduction
A=113-316 P transcription elongation from RNA polymerase II promoter
B=1-200 C nucleus
Sequences
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1vol.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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