General information
PDB ID 1VTL
Title CO-CRYSTAL STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF A TATA ELEMENT
PDB header TRANSCRIPTION/DNA
Date 1993-12-17
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.25
Kind dna
Organism ARABIDOPSIS THALIANA
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1vtl.pdb EF ABCD 0
Biounits:
1vtl.pdb1.pdb E AB 1
1vtl.pdb2.pdb F CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TBP Domain P28147_112-195 3.7e-33 1 CL0407 E 112 195 AB  S-Bb S-Mn L-Bb L-Mj L-Mn 
TBP Domain P28147_22-104 9.7e-32 1 CL0407 E 22 104 AB  S-Bb S-Mn L-Bb L-Mn 
TBP Domain P28147_112-195 3.7e-33 1 CL0407 F 112 195 CD  S-Bb S-Mn L-Bb L-Mj L-Mn 
TBP Domain P28147_22-104 9.7e-32 1 CL0407 F 22 104 CD  S-Bb S-Mn L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
E/F=13-198 C nucleus
E/F=13-198 C transcription factor TFIID complex
E/F=13-198 C transcription regulator complex
E/F=13-198 F DNA-binding transcription factor activity
E/F=13-198 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
E/F=13-198 F RNA polymerase II core promoter sequence-specific DNA binding
E/F=13-198 F transcription factor binding
E/F=13-198 P DNA-templated transcription, initiation
E/F=13-198 P transcription by RNA polymerase II
Sequences
Download file with secondary structure created by Stride  
1vtl.pdb1.pdb:   [ download sequences in FASTA format ]
A (dna): 
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B (dna): 
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E (protein): 
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1vtl.pdb2.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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F (protein): 
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