General information
PDB ID 1W0T
Title HTRF1 DNA-BINDING DOMAIN IN COMPLEX WITH TELOMERIC DNA.
PDB header DNA-BINDING PROTEIN
Date 2004-06-11
Experimental method X-RAY DIFFRACTION
Resolution (A) 2
Kind dna
Organism HOMO SAPIENS
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CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1w0t.pdb AB CD 0
Biounits:
1w0t.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Myb_DNA-binding Domain P54274_380-428 2e-12 1 CL0123 A 380 428 CD  H-Bb H-Mj L-Bb L-Mn 
Myb_DNA-binding Domain P54274_380-428 2e-12 1 CL0123 B 380 428 CD  H-Bb H-Mj L-Bb L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: DNA-binding domain of telomeric protein
DNA-binding domain of human telomeric protein, hTRF1 A N/A N/A CD -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: DNA-binding domain of telomeric protein
DNA-binding domain of human telomeric protein, hTRF1 B N/A N/A CD -
GO terms
Protein chains: GO type: GO description:
A/B=379-431 C chromosome, telomeric region
A/B=379-431 C cytoplasm
A/B=379-431 C fibrillar center
A/B=379-431 C nuclear body
A/B=379-431 C nuclear chromosome, telomeric region
A/B=379-431 C nuclear telomere cap complex
A/B=379-431 C nucleolus
A/B=379-431 C nucleoplasm
A/B=379-431 C nucleus
A/B=379-431 C shelterin complex
A/B=379-431 C spindle
A/B=379-431 F ankyrin repeat binding
A/B=379-431 F DNA binding
A/B=379-431 F DNA binding, bending
A/B=379-431 F double-stranded telomeric DNA binding
A/B=379-431 F G-rich strand telomeric DNA binding
A/B=379-431 F identical protein binding
A/B=379-431 F microtubule binding
A/B=379-431 F protein C-terminus binding
A/B=379-431 F protein homodimerization activity
A/B=379-431 F telomeric DNA binding
A/B=379-431 P cell division
A/B=379-431 P meiotic telomere clustering
A/B=379-431 P negative regulation of DNA replication
A/B=379-431 P negative regulation of establishment of protein localization to telomere
A/B=379-431 P negative regulation of establishment of protein-containing complex localization to telomere
A/B=379-431 P negative regulation of establishment of RNA localization to telomere
A/B=379-431 P negative regulation of exonuclease activity
A/B=379-431 P negative regulation of telomerase activity
A/B=379-431 P negative regulation of telomere maintenance via semi-conservative replication
A/B=379-431 P negative regulation of telomere maintenance via telomerase
A/B=379-431 P negative regulation of telomere maintenance via telomere lengthening
A/B=379-431 P negative regulation of telomeric D-loop disassembly
A/B=379-431 P positive regulation of shelterin complex assembly
A/B=379-431 P response to drug
A/B=379-431 P t-circle formation
A/B=379-431 P telomere capping
A/B=379-431 P telomere maintenance
A/B=379-431 P telomere maintenance via telomerase
A/B=379-431 P telomeric D-loop disassembly
Sequences
Download file with secondary structure created by Stride  
1w0t.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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