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Composition of PDB entry and biounits
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File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
PDB entry: | |||||
pdb1w2b.pdb | 125ABCDEFGHIJKLMNOPQRSTUVWXYZ | 09 | 0 |
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Biounits: | |||||
1w2b.pdb1.pdb | 125ABCDEFGHIJKLMNOPQRSTUVWXYZ | 09 | 1 |
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Pfam domains
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Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
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Domain | P20276_90-225 | 6.9e-46 | 1 |
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A | 89 | 224 | 0 |
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Domain | P20276_11-83 | 3.2e-17 | 1 |
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A | 10 | 82 | 0 |
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Domain | P14124_12-65 | 5e-16 | 1 |
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D | 11 | 64 | 09 |
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Domain | P14124_69-166 | 3.8e-08 | 1 | No_clan | D | 68 | 152 | 09 |
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Domain | P14135_8-80 | 5.8e-15 | 1 | No_clan | E | 7 | 79 | 0 |
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Domain | P14135_92-166 | 9.7e-14 | 1 | No_clan | E | 91 | 165 | 0 |
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Domain | P12743_15-108 | 3.1e-25 | 1 |
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F | 14 | 108 | 0 |
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Domain | P22450_12-132 | 4.8e-36 | 1 | No_clan | J | 12 | 132 | 0 |
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Domain | P10970_17-149 | 7.2e-25 | 1 | No_clan | Q | 16 | 148 | 0 |
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Domain | P14121_2-52 | 7.3e-11 | 1 | No_clan | V | 2 | 52 | 09 |
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Family | P22452_8-49 | 2.4e-14 | 1 | No_clan | 1 | 7 | 48 | 0 |
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Family | P32411_16-91 | 1.1e-25 | 1 |
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2 | 16 | 91 | 0 |
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Family | P0A850_25-59 | 9.3e-11 | 1 | No_clan | 5 | 25 | 59 | 0 |
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Family | P20279_2-338 | 1.2e-109 | 1 |
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B | 1 | 337 | 0 |
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Family | P12735_16-246 | 6.4e-41 | 1 | No_clan | C | 16 | 246 | 0 |
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Family | P60617_12-166 | 1.6e-23 | 1 | No_clan | H | 9 | 159 | 09 |
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Family | P29198_10-114 | 6.8e-06 | 1 | No_clan | I | 10 | 114 | 0 |
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Family | P12737_25-143 | 9.4e-18 | 1 |
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K | 24 | 142 | 0 |
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Family | P60618_4-191 | 3.6e-81 | 1 |
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L | 3 | 190 | 0 |
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Family | P14123_5-100 | 6e-17 | 1 |
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M | 4 | 99 | 09 |
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Family | P14123_92-133 | 2.3e-07 | 1 |
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M | 91 | 132 | 09 |
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Family | 8.6e-06 | 0 |
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N | 1 | 115 | 0 |
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Family | P14119_3-144 | 5.3e-56 | 1 | No_clan | O | 2 | 143 | 0 |
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Family | P12734_2-96 | 6.6e-26 | 1 |
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P | 2 | 94 | 09 |
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Family | P12732_4-77 | 1.2e-15 | 1 | No_clan | R | 3 | 76 | 0 |
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Family | P10972_2-116 | 4.1e-23 | 1 | No_clan | S | 1 | 115 | 0 |
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Family | P10972_45-76 | 3.8e-08 | 1 |
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S | 44 | 75 | 0 |
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Family | P14116_5-57 | 5.1e-21 | 1 |
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T | 4 | 56 | 0 |
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Family | P10971_7-63 | 6.4e-20 | 1 |
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U | 6 | 62 | 0 |
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Family | P18138_8-85 | 1.2e-09 | 1 | No_clan | W | 8 | 84 | 0 |
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Family | P12736_126-231 | 4e-35 | 1 | No_clan | X | 125 | 230 | 0 |
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Family | P60619_11-82 | 3.9e-27 | 1 |
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Y | 10 | 82 | 0 |
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Family | P32410_3-56 | 1.9e-22 | 1 |
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Z | 2 | 55 | 0 |
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SCOP domains
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Classification: | Protein: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
50S subunit | 1 | N/A | N/A | 0 | - |
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50S subunit | 2 | N/A | N/A | 0 | - |
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50S subunit | 5 | N/A | N/A | 0 | - |
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50S subunit | A | N/A | N/A | 0 | - |
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50S subunit | B | N/A | N/A | 0 | - |
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50S subunit | C | N/A | N/A | 0 | - |
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50S subunit | D | N/A | N/A | 09 | - |
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50S subunit | E | N/A | N/A | 0 | - |
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50S subunit | F | N/A | N/A | 0 | - |
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50S subunit | G | N/A | N/A | 0 | - |
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50S subunit | H | N/A | N/A | 09 | - |
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50S subunit | I | N/A | N/A | 0 | - |
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50S subunit | J | N/A | N/A | 0 | - |
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50S subunit | K | N/A | N/A | 0 | - |
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50S subunit | L | N/A | N/A | 0 | - |
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50S subunit | M | N/A | N/A | 09 | - |
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50S subunit | N | N/A | N/A | 0 | - |
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50S subunit | O | N/A | N/A | 0 | - |
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50S subunit | P | N/A | N/A | 09 | - |
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50S subunit | R | N/A | N/A | 0 | - |
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50S subunit | S | N/A | N/A | 0 | - |
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50S subunit | T | N/A | N/A | 0 | - |
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50S subunit | U | N/A | N/A | 0 | - |
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50S subunit | V | N/A | N/A | 09 | - |
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50S subunit | W | N/A | N/A | 0 | - |
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50S subunit | X | N/A | N/A | 0 | - |
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50S subunit | Y | N/A | N/A | 0 | - |
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50S subunit | Z | N/A | N/A | 0 | - |
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GO terms | ||
Protein chains: | GO type: | GO description: |
2=1-92 | F | metal ion binding |
2=1-92 | F | tRNA binding |
5=1-144 | C | soluble fraction |
5=1-144 | C | cytosol |
5=1-144 | C | membrane |
5=1-144 | F | peptidyl-prolyl cis-trans isomerase activity |
5=1-144 | F | ribosome binding |
5=1-144 | P | protein complex assembly |
5=1-144 | P | cell cycle |
5=1-144 | P | protein transport |
5=1-144 | P | cell division |
5=1-144 | P | 'de novo' cotranslational protein folding |
F=2-119 | F | RNA binding |
G=1-348 | P | ribosome biogenesis |
M=2-186 | C | ribosome |
M=2-186 | F | structural constituent of ribosome |
M=2-186 | F | 5S rRNA binding |
M=2-186 | P | translation |
V=1-154 | C | large ribosomal subunit |
X=2-240 | F | rRNA binding |
X=2-240 | F | nucleotide binding |
X=2-240 | F | DNA binding |
X=2-240 | P | DNA repair |
Sequences
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1w2b.pdb1.pdb:
[
download sequences in FASTA format
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1 (protein):
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2 (protein):
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5 (protein):
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A (protein):
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B (protein):
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C (protein):
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D (protein):
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E (protein):
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F (protein):
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G (protein):
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H (protein):
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I (protein):
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J (protein):
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K (protein):
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L (protein):
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M (protein):
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N (protein):
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O (protein):
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P (protein):
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Q (protein):
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R (protein):
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S (protein):
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T (protein):
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U (protein):
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V (protein):
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W (protein):
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X (protein):
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Y (protein):
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Z (protein):
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0 (rna):
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9 (rna):
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