General information
PDB ID 1W36
Title RECBCD:DNA COMPLEX
PDB header RECOMBINATION
Date 2004-07-13
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.1
Kind dna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1w36.pdb BCDEFG YZ 0
Biounits:
1w36.pdb1.pdb BCD Y 1
1w36.pdb2.pdb EFG Z 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
UvrD-helicase Domain P08394_4-438 1.1e-69 1 CL0023 B 4 438 Y  H-Bb L-Bb 
UvrD_C Domain P08394_656-810 0.000000000025 1 CL0023 B 656 810 Y   
PDDEXK_1 Domain P08394_934-1173 0.0000076 1 CL0236 B 934 1170   
UvrD_C Domain 0.000017 0 CL0023 B 441 651 Y
AAA_30 Domain P04993_152-395 9.5e-33 1 CL0023 D 152 395   
UvrD_C_2 Domain P04993_532-580 0.0000000000000068 1 CL0023 D 532 580   
UvrD-helicase Domain P08394_4-438 1.1e-69 1 CL0023 E 4 438 Z  H-Bb 
UvrD_C Domain P08394_656-810 0.000000000025 1 CL0023 E 656 810 Z   
PDDEXK_1 Domain P08394_934-1173 0.0000076 1 CL0236 E 934 1170   
UvrD_C Domain 0.000017 0 CL0023 E 441 651 Z
AAA_30 Domain P04993_152-395 9.5e-33 1 CL0023 G 152 395   
UvrD_C_2 Domain P04993_532-580 0.0000000000000068 1 CL0023 G 532 580   
Exonuc_V_gamma Family P07648_1-806 0 1 CL0023 C 1 806   
Exonuc_V_gamma Family P07648_1-806 8.8e-199 1 CL0023 F 294 806   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: Tandem AAA-ATPase domain
Exodeoxyribonuclease V beta chain (RecB), N-terminal domain B 1 485 Y -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: Tandem AAA-ATPase domain
Exodeoxyribonuclease V beta chain (RecB), N-terminal domain B 486 880 Y -
Class: Alpha and beta proteins (a/b)
  Fold: Restriction endonuclease-like
    Superfamily: Restriction endonuclease-like
      Family: Exodeoxyribonuclease V beta chain (RecB), C-terminal domain
Exodeoxyribonuclease V beta chain (RecB), C-terminal domain B 899 1174 -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: Tandem AAA-ATPase domain
Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain C 1 347 -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: Tandem AAA-ATPase domain
Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain C 348 817 -
Class: Alpha and beta proteins (a/b)
  Fold: Restriction endonuclease-like
    Superfamily: Restriction endonuclease-like
      Family: Exodeoxyribonuclease V beta chain (RecC), C-terminal domain
Exodeoxyribonuclease V beta chain (RecC), C-terminal domain C 818 1121 Y  L-Bb L-Mj L-Mn 
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: Tandem AAA-ATPase domain
Exodeoxyribonuclease V alpha chain (RecD) D 2 360 -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: Tandem AAA-ATPase domain
Exodeoxyribonuclease V alpha chain (RecD) D 361 606 -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: Tandem AAA-ATPase domain
Exodeoxyribonuclease V beta chain (RecB), N-terminal domain E 1 485 Z -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: Tandem AAA-ATPase domain
Exodeoxyribonuclease V beta chain (RecB), N-terminal domain E 486 880 Z -
Class: Alpha and beta proteins (a/b)
  Fold: Restriction endonuclease-like
    Superfamily: Restriction endonuclease-like
      Family: Exodeoxyribonuclease V beta chain (RecB), C-terminal domain
Exodeoxyribonuclease V beta chain (RecB), C-terminal domain E 899 1174 -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: Tandem AAA-ATPase domain
Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain F 1 347 -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: Tandem AAA-ATPase domain
Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain F 348 817 -
Class: Alpha and beta proteins (a/b)
  Fold: Restriction endonuclease-like
    Superfamily: Restriction endonuclease-like
      Family: Exodeoxyribonuclease V beta chain (RecC), C-terminal domain
Exodeoxyribonuclease V beta chain (RecC), C-terminal domain F 818 1121 Z  H-Bb L-Bb L-Mj L-Mn 
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: Tandem AAA-ATPase domain
Exodeoxyribonuclease V alpha chain (RecD) G 2 360 -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: Tandem AAA-ATPase domain
Exodeoxyribonuclease V alpha chain (RecD) G 361 606 -
GO terms
Protein chains: GO type: GO description:
B/E=1-1180 F DNA binding
C/F=1-1122 C exodeoxyribonuclease V complex
C/F=1-1122 F endonuclease activity
C/F=1-1122 F exodeoxyribonuclease V activity
C/F=1-1122 F ATP binding
C/F=1-1122 F ATP-dependent DNA helicase activity
C/F=1-1122 P double-strand break repair
C/F=1-1122 P DNA recombination
D/G=1-608 F helicase activity
D/G=1-608 F single-stranded DNA-dependent ATPase activity
Sequences
Download file with secondary structure created by Stride  
1w36.pdb1.pdb:   [ download sequences in FASTA format ]
Y (dna): 
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B (protein): 
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C (protein): 
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D (protein): 
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1w36.pdb2.pdb:   [ download sequences in FASTA format ]
Z (dna): 
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E (protein): 
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F (protein): 
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G (protein): 
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