General information
PDB ID 1X9N
Title CRYSTAL STRUCTURE OF HUMAN DNA LIGASE I BOUND TO 5'-ADENYLATED, NICKED DNA
PDB header LIGASE/DNA
Date 2004-08-23
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind dna
Organism HOMO SAPIENS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1x9n.pdb A BCD 0
Biounits:
1x9n.pdb1.pdb A BCD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_ligase_A_M Domain P18858_542-746 5.1e-64 1 CL0078 A 541 746 BCD  H-Bb S-Bb L-Bb 
DNA_ligase_A_N Family P18858_288-464 2.8e-32 1 No_clan A 288 464 BCD  H-Bb L-Bb L-Mn 
DNA_ligase_A_C Family P18858_771-882 6.4e-24 1 CL0021 A 771 882 CD  H-Bb S-Bb L-Bb L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: ATP-dependent DNA ligase DNA-binding domain
    Superfamily: ATP-dependent DNA ligase DNA-binding domain
      Family: ATP-dependent DNA ligase DNA-binding domain
DNA ligase I (LIG1) A 262 533 BCD  H-Bb L-Bb L-Mn 
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: DNA ligase/mRNA capping enzyme postcatalytic domain
DNA ligase I (LIG1) A 754 901 CD -
Class: Alpha and beta proteins (a+b)
  Fold: ATP-grasp
    Superfamily: DNA ligase/mRNA capping enzyme, catalytic domain
      Family: ATP-dependent DNA ligase catalytic domain
DNA ligase I (LIG1) A 534 753 BCD -
GO terms
Protein chains: GO type: GO description:
A=233-919 C cytoplasm
A=233-919 C intracellular membrane-bounded organelle
A=233-919 C mitochondrion
A=233-919 C nucleoplasm
A=233-919 C nucleus
A=233-919 F ATP binding
A=233-919 F DNA binding
A=233-919 F DNA ligase (ATP) activity
A=233-919 F DNA ligase activity
A=233-919 F metal ion binding
A=233-919 P anatomical structure morphogenesis
A=233-919 P base-excision repair
A=233-919 P cell division
A=233-919 P DNA biosynthetic process
A=233-919 P DNA ligation
A=233-919 P DNA ligation involved in DNA repair
A=233-919 P DNA recombination
A=233-919 P DNA repair
A=233-919 P lagging strand elongation
A=233-919 P mismatch repair
A=233-919 P nucleotide-excision repair, DNA gap filling
A=233-919 P Okazaki fragment processing involved in mitotic DNA replication
A=233-919 P transcription-coupled nucleotide-excision repair
Sequences
Download file with secondary structure created by Stride  
1x9n.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
Click "SHOW" for view sequence
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text