General information
PDB ID 1Y39
Title CO-EVOLUTION OF PROTEIN AND RNA STRUCTURES WITHIN A HIGHLY CONSERVED RIBOSOMAL DOMAIN
PDB header STRUCTURAL PROTEIN/RNA
Date 2004-11-24
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.8
Kind rna
Organism GEOBACILLUS STEAROTHERMOPHILUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1y39.pdb AB CD 0
Biounits:
1y39.pdb1.pdb A C 1
1y39.pdb2.pdb B D 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L11 Domain P56210_63-129 6.7e-27 1 No_clan A 6 74 C   
Ribosomal_L11 Domain P56210_63-129 6e-27 1 No_clan B 206 274 D   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Ribosomal protein L11, C-terminal domain
      Family: Ribosomal protein L11, C-terminal domain
Ribosomal protein L11, C-terminal domain A 2 75 C -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Ribosomal protein L11, C-terminal domain
      Family: Ribosomal protein L11, C-terminal domain
Ribosomal protein L11, C-terminal domain B 205 275 D -
GO terms
Protein chains: GO type: GO description:
A/B=58-133 C ribosome
A/B=58-133 F structural constituent of ribosome
A/B=58-133 F rRNA binding
A/B=58-133 P translation
Sequences
Download file with secondary structure created by Stride  
1y39.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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C (rna): 
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1y39.pdb2.pdb:   [ download sequences in FASTA format ]
B (protein): 
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D (rna): 
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