General information
PDB ID 1YQM
Title CATALYTICALLY INACTIVE HUMAN 8-OXOGUANINE GLYCOSYLASE CROSSLINKED TO 7-DEAZAGUANINE CONTAINING DNA
PDB header HYDROLASE/DNA
Date 2005-02-02
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.5
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1yqm.pdb A BC 0
Biounits:
1yqm.pdb1.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HhH-GPD Domain O15527_142-301 1.4e-18 1 CL0198 A 142 301 BC   
OGG_N Family O15527_25-141 4.7e-34 1 CL0407 A 25 141   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA-glycosylase
    Superfamily: DNA-glycosylase
      Family: DNA repair glycosylase, 2 C-terminal domains
8-oxoguanine glycosylase A 136 325 BC  H-Bb L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: DNA repair glycosylase, N-terminal domain
8-oxoguanine glycosylase A 12 135 -
GO terms
Protein chains: GO type: GO description:
A=12-327 C mitochondrion
A=12-327 C nuclear speck
A=12-327 C nuclear matrix
A=12-327 C cytoplasm
A=12-327 F damaged DNA binding
A=12-327 F oxidized purine nucleobase lesion DNA N-glycosylase activity
A=12-327 F endonuclease activity
A=12-327 P regulation of protein import into nucleus, translocation
A=12-327 P response to radiation
A=12-327 P nucleotide-excision repair
A=12-327 P depurination
A=12-327 P response to oxidative stress
A=12-327 P regulation of transcription, DNA-dependent
Sequences
Download file with secondary structure created by Stride  
1yqm.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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