General information
PDB ID 1YTB
Title CRYSTAL STRUCTURE OF A YEAST TBP/TATA-BOX COMPLEX
PDB header TRANSCRIPTION/DNA
Date 1994-09-28
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.8
Kind dna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1ytb.pdb AB CD 0
Biounits:
1ytb.pdb1.pdb A C 1
1ytb.pdb2.pdb B D 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TBP Domain P13393_154-237 6e-33 1 CL0407 A 154 237 C  S-Bb S-Mn L-Bb L-Mj L-Mn 
TBP Domain P13393_64-146 6.8e-33 1 CL0407 A 64 146 C  S-Bb S-Mn L-Bb L-Mn 
TBP Domain P13393_154-237 6e-33 1 CL0407 B 154 237 D  S-Bb S-Mn L-Bb L-Mj L-Mn 
TBP Domain P13393_64-146 6.8e-33 1 CL0407 B 64 146 D  S-Bb S-Mn L-Bb L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain A 61 155 C  S-Bb S-Mn L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain A 156 240 C  S-Bb S-Mn L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain B 61 155 D  S-Bb S-Mn L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain B 156 240 D  S-Bb S-Mn L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
A/B=61-240 C nucleoplasm
A/B=61-240 C nucleus
A/B=61-240 C protein-containing complex
A/B=61-240 C transcription factor TFIIA complex
A/B=61-240 C transcription factor TFIID complex
A/B=61-240 C transcription factor TFIIIB complex
A/B=61-240 C transcription regulator complex
A/B=61-240 F chromatin binding
A/B=61-240 F disordered domain specific binding
A/B=61-240 F DNA binding, bending
A/B=61-240 F DNA-binding transcription factor activity
A/B=61-240 F RNA polymerase I general transcription initiation factor binding
A/B=61-240 F RNA polymerase II activating transcription factor binding
A/B=61-240 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/B=61-240 F RNA polymerase II core promoter sequence-specific DNA binding
A/B=61-240 F RNA polymerase II general transcription initiation factor activity
A/B=61-240 F RNA polymerase III general transcription initiation factor activity
A/B=61-240 F RNA polymerase III transcription regulatory region sequence-specific DNA binding
A/B=61-240 F TFIIA-class transcription factor complex binding
A/B=61-240 F transcription factor binding
A/B=61-240 P nucleolar large rRNA transcription by RNA polymerase I
A/B=61-240 P RNA polymerase I preinitiation complex assembly
A/B=61-240 P RNA polymerase II preinitiation complex assembly
A/B=61-240 P RNA polymerase III preinitiation complex assembly
A/B=61-240 P transcription by RNA polymerase II
A/B=61-240 P transposon integration
Sequences
Download file with secondary structure created by Stride  
1ytb.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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A (protein): 
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1ytb.pdb2.pdb:   [ download sequences in FASTA format ]
D (dna): 
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B (protein): 
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