General information
PDB ID 1YUJ
Title SOLUTION NMR STRUCTURE OF THE GAGA FACTOR/DNA COMPLEX, 50 STRUCTURES
PDB header DNA BINDING PROTEIN/DNA
Date 1996-12-31
Experimental method SOLUTION NMR
Resolution (A) N/A
Kind dna
Organism DROSOPHILA MELANOGASTER
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CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1yuj.pdb A BC 50
NMR models:
1yuj.MDL1.pdb A BC 1
1yuj.MDL2.pdb A BC 1
1yuj.MDL3.pdb A BC 1
1yuj.MDL4.pdb A BC 1
1yuj.MDL5.pdb A BC 1
1yuj.MDL6.pdb A BC 1
1yuj.MDL7.pdb A BC 1
1yuj.MDL8.pdb A BC 1
1yuj.MDL9.pdb A BC 1
1yuj.MDL10.pdb A BC 1
1yuj.MDL11.pdb A BC 1
1yuj.MDL12.pdb A BC 1
1yuj.MDL13.pdb A BC 1
1yuj.MDL14.pdb A BC 1
1yuj.MDL15.pdb A BC 1
1yuj.MDL16.pdb A BC 1
1yuj.MDL17.pdb A BC 1
1yuj.MDL18.pdb A BC 1
1yuj.MDL19.pdb A BC 1
1yuj.MDL20.pdb A BC 1
1yuj.MDL21.pdb A BC 1
1yuj.MDL22.pdb A BC 1
1yuj.MDL23.pdb A BC 1
1yuj.MDL24.pdb A BC 1
1yuj.MDL25.pdb A BC 1
1yuj.MDL26.pdb A BC 1
1yuj.MDL27.pdb A BC 1
1yuj.MDL28.pdb A BC 1
1yuj.MDL29.pdb A BC 1
1yuj.MDL30.pdb A BC 1
1yuj.MDL31.pdb A BC 1
1yuj.MDL32.pdb A BC 1
1yuj.MDL33.pdb A BC 1
1yuj.MDL34.pdb A BC 1
1yuj.MDL35.pdb A BC 1
1yuj.MDL36.pdb A BC 1
1yuj.MDL37.pdb A BC 1
1yuj.MDL38.pdb A BC 1
1yuj.MDL39.pdb A BC 1
1yuj.MDL40.pdb A BC 1
1yuj.MDL41.pdb A BC 1
1yuj.MDL42.pdb A BC 1
1yuj.MDL43.pdb A BC 1
1yuj.MDL44.pdb A BC 1
1yuj.MDL45.pdb A BC 1
1yuj.MDL46.pdb A BC 1
1yuj.MDL47.pdb A BC 1
1yuj.MDL48.pdb A BC 1
1yuj.MDL49.pdb A BC 1
1yuj.MDL50.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
GAGA Domain Q08605_319-372 2.4e-36 1 CL0361 A 10 63 BC  H-Bb H-Mj L-Bb L-Mj L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Small proteins
  Fold: beta-beta-alpha zinc fingers
    Superfamily: beta-beta-alpha zinc fingers
      Family: Classic zinc finger, C2H2
GAGA factor A N/A N/A BC -
GO terms
Protein chains: GO type: GO description:
A=319-372 C euchromatin
A=319-372 C nucleus
A=319-372 C pericentric heterochromatin
A=319-372 C polytene chromosome
A=319-372 C protein-containing complex
A=319-372 F chromatin binding
A=319-372 F core promoter sequence-specific DNA binding
A=319-372 F DNA binding
A=319-372 F DNA-binding transcription activator activity
A=319-372 F DNA-binding transcription factor activity
A=319-372 F identical protein binding
A=319-372 F POZ domain binding
A=319-372 F protein heterodimerization activity
A=319-372 F protein homodimerization activity
A=319-372 F sequence-specific DNA binding
A=319-372 F transcription factor binding
A=319-372 F zinc ion binding
A=319-372 P amyloid fibril formation
A=319-372 P ATP-dependent chromatin remodeling
A=319-372 P cell division
A=319-372 P chromatin assembly
A=319-372 P chromatin organization
A=319-372 P dosage compensation
A=319-372 P imaginal disc-derived wing morphogenesis
A=319-372 P negative regulation of transcription, DNA-templated
A=319-372 P nuclear division
A=319-372 P nucleosome organization
A=319-372 P oogenesis
A=319-372 P positive regulation of chromatin silencing
A=319-372 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain
A=319-372 P positive regulation of transcription by RNA polymerase II
A=319-372 P positive regulation of transcription, DNA-templated
A=319-372 P regulation of transcription by RNA polymerase II
A=319-372 P response to ecdysone
A=319-372 P spermatogenesis
A=319-372 P syncytial blastoderm mitotic cell cycle
Sequences
Download file with secondary structure created by Stride  
1yuj.MDL1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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