General information
PDB ID 1Z1B
Title CRYSTAL STRUCTURE OF A LAMBDA INTEGRASE DIMER BOUND TO A COC' CORE SITE
PDB header DNA BINDING PROTEIN/DNA
Date 2005-03-03
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.8
Kind dna
Organism ENTEROBACTERIA PHAGE LAMBDA
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1z1b.pdb AB CDEFG 0
Biounits:
1z1b.pdb1.pdb ABMN CDEFGHIJKL 0
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
Arm-DNA-bind_1 Domain 3.9e-22 1 CL0081 A 8 69 FG
Phage_int_SAM_1 Domain 0.0000005 1 CL0469 A 80 158 IJ
Arm-DNA-bind_1 Domain 1.9e-22 1 CL0081 B 7 69 FG
Phage_int_SAM_1 Domain 0.0000005 1 CL0469 B 80 158 CE
Arm-DNA-bind_1 Domain 3.9e-22 1 CL0081 M 8 69 KL
Phage_int_SAM_1 Domain 0.0000005 1 CL0469 M 80 158 DE
Arm-DNA-bind_1 Domain 1.9e-22 1 CL0081 N 7 69 KL
Phage_int_SAM_1 Domain 0.0000005 1 CL0469 N 80 158 HJ
Phage_integrase Family 5.7e-34 1 CL0382 A 178 343 IJ
Phage_integrase Family 5.7e-34 1 CL0382 B 178 343 CEI
Phage_integrase Family 5.7e-34 1 CL0382 M 178 343 DE
Phage_integrase Family 5.7e-34 1 CL0382 N 178 343 HJD
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: DNA-binding domain
    Superfamily: DNA-binding domain
      Family: lambda integrase N-terminal domain
lambda integrase N-terminal domain A 11 59 FG -
Class: Alpha and beta proteins (a+b)
  Fold: DNA breaking-rejoining enzymes
    Superfamily: DNA breaking-rejoining enzymes
      Family: Lambda integrase-like, catalytic core
Integrase (Int) A 74 356 IJ  H-Bb H-Mj L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: DNA-binding domain
    Superfamily: DNA-binding domain
      Family: lambda integrase N-terminal domain
lambda integrase N-terminal domain B 11 59 FG -
Class: Alpha and beta proteins (a+b)
  Fold: DNA breaking-rejoining enzymes
    Superfamily: DNA breaking-rejoining enzymes
      Family: Lambda integrase-like, catalytic core
Integrase (Int) B 74 356 CEI  H-Bb H-Mj L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
A/B=1-356 F DNA binding
A/B=1-356 F integrase activity
A/B=1-356 P DNA recombination
A/B=1-356 P DNA integration
Sequences
Download file with secondary structure created by Stride  
1z1b.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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E (dna): 
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F (dna): 
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G (dna): 
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H (dna): 
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I (dna): 
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J (dna): 
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K (dna): 
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L (dna): 
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A (protein): 
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B (protein): 
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M (protein): 
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N (protein): 
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