General information
PDB ID 1Z1B
Title CRYSTAL STRUCTURE OF A LAMBDA INTEGRASE DIMER BOUND TO A COC' CORE SITE
PDB header DNA BINDING PROTEIN/DNA
Date 2005-03-03
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.8
Kind dna
Organism ENTEROBACTERIA PHAGE LAMBDA
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1z1b.pdb AB CDEFG 0
Biounits:
1z1b.pdb1.pdb AB CDEFG 2
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Arm-DNA-bind_1 Domain P03700_7-69 2.8e-24 1 CL0081 A 8 69 FG  S-Bb S-Mj L-Bb 
Phage_int_SAM_1 Domain P03700_80-158 2.1e-08 1 CL0469 A 80 158 DE  H-Bb H-Mj L-Bb 
Arm-DNA-bind_1 Domain P03700_7-69 1.3e-24 1 CL0081 B 7 69 FG  S-Bb S-Mj L-Bb 
Phage_int_SAM_1 Domain P03700_80-158 2.2e-08 1 CL0469 B 80 158 CE  H-Bb H-Mj L-Bb 
Phage_integrase Family P03700_178-347 6.5e-34 1 CL0382 A 178 343 DE  H-Bb H-Mj L-Bb L-Mn 
Phage_integrase Family P03700_178-347 6.6e-34 1 CL0382 B 178 343 CED  H-Bb H-Mj L-Bb L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: DNA breaking-rejoining enzymes
    Superfamily: DNA breaking-rejoining enzymes
      Family: Lambda integrase-like, catalytic core
Integrase (Int) A 74 356 DE  H-Bb H-Mj L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: DNA breaking-rejoining enzymes
    Superfamily: DNA breaking-rejoining enzymes
      Family: Lambda integrase-like, catalytic core
Integrase (Int) B 74 356 CED  H-Bb H-Mj L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: DNA-binding domain
    Superfamily: DNA-binding domain
      Family: lambda integrase N-terminal domain
lambda integrase N-terminal domain A 11 59 FG -
Class: Alpha and beta proteins (a+b)
  Fold: DNA-binding domain
    Superfamily: DNA-binding domain
      Family: lambda integrase N-terminal domain
lambda integrase N-terminal domain B 11 59 FG -
GO terms
Protein chains: GO type: GO description:
A/B=1-356 F DNA binding
A/B=1-356 F hydrolase activity
A/B=1-356 F integrase activity
A/B=1-356 F transferase activity
A/B=1-356 P DNA integration
A/B=1-356 P DNA recombination
A/B=1-356 P establishment of integrated proviral latency
A/B=1-356 P provirus excision
A/B=1-356 P viral entry into host cell
A/B=1-356 P viral genome integration into host DNA
Sequences
Download file with secondary structure created by Stride  
1z1b.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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E (dna): 
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F (dna): 
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G (dna): 
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A (protein): 
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B (protein): 
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