General information
PDB ID 1Z9C
Title CRYSTAL STRUCTURE OF OHRR BOUND TO THE OHRA PROMOTER: STRUCTURE OF MARR FAMILY PROTEIN WITH OPERATOR DNA
PDB header TRANSCRIPTION/DNA
Date 2005-04-01
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.64
Kind dna
Organism BACILLUS SUBTILIS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1z9c.pdb ABCDEF GHIJKL 0
Biounits:
1z9c.pdb1.pdb AB GH 1
1z9c.pdb2.pdb CD IJ 1
1z9c.pdb3.pdb EF KL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
MarR Domain O34777_38-96 7.8e-20 1 CL0123 A 38 96 GH  H-Bb H-Mj S-Bb L-Bb L-Mn 
MarR Domain O34777_38-96 7.8e-20 1 CL0123 B 38 96 GH  H-Bb H-Mj S-Bb L-Bb L-Mj L-Mn 
MarR Domain O34777_38-96 7.9e-20 1 CL0123 C 38 96 IJ  H-Bb H-Mj S-Bb L-Bb 
MarR Domain O34777_38-96 7.8e-20 1 CL0123 D 38 96 IJ  H-Bb H-Mj S-Bb L-Bb L-Mj L-Mn 
MarR Domain O34777_38-96 7.8e-20 1 CL0123 E 38 96 KL  H-Bb H-Mj S-Bb L-Bb 
MarR Domain O34777_38-96 7.9e-20 1 CL0123 F 38 96 KL  H-Bb H-Mj L-Bb L-Mj L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: MarR-like transcriptional regulators
Organic hydroperoxide resistance transcriptional regulator OhrR A 9 144 GH  H-Bb H-Mj S-Bb L-Bb L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: MarR-like transcriptional regulators
Organic hydroperoxide resistance transcriptional regulator OhrR B 8 144 GH  H-Bb H-Mj S-Bb L-Bb L-Mj L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: MarR-like transcriptional regulators
Organic hydroperoxide resistance transcriptional regulator OhrR C 8 144 IJ  H-Bb H-Mj S-Bb L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: MarR-like transcriptional regulators
Organic hydroperoxide resistance transcriptional regulator OhrR D 8 144 IJ  H-Bb H-Mj S-Bb L-Bb L-Mj L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: MarR-like transcriptional regulators
Organic hydroperoxide resistance transcriptional regulator OhrR E 8 144 KL  H-Bb H-Mj S-Bb L-Bb L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: MarR-like transcriptional regulators
Organic hydroperoxide resistance transcriptional regulator OhrR F 8 144 KL  H-Bb H-Mj L-Bb L-Mj L-Mn 
GO terms
Protein chains: GO type: GO description:
A/B/C/D/E/F=1-147 C cytoplasm
A/B/C/D/E/F=1-147 F sequence-specific DNA binding transcription factor activity
A/B/C/D/E/F=1-147 F DNA binding
A/B/C/D/E/F=1-147 P transcription, DNA-dependent
Sequences
Download file with secondary structure created by Stride  
1z9c.pdb1.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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A (protein): 
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B (protein): 
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1z9c.pdb2.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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C (protein): 
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D (protein): 
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1z9c.pdb3.pdb:   [ download sequences in FASTA format ]
K (dna): 
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L (dna): 
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E (protein): 
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F (protein): 
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