General information
PDB ID 1ZC8
Title COORDINATES OF TMRNA, SMPB, EF-TU AND H44 FITTED INTO CRYO-EM MAP OF THE 70S RIBOSOME AND TMRNA COMPLEX
PDB header RNA BINDING PROTEIN/RNA
Date 2005-04-11
Experimental method ELECTRON MICROSCOPY
Resolution (A) 13
Kind rna
Organism THERMUS THERMOPHILUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1zc8.pdb KY ABCGFHIJZ 0
Biounits:
1zc8.pdb1.pdb KY ABCGFHIJZ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
GTP_EFTU Domain Q5SHN6_10-213 4e-62 1 CL0023 Y 9 212   
GTP_EFTU_D3 Domain Q5SHN6_310-405 7.2e-35 1 No_clan Y 309 404   
GTP_EFTU_D2 Domain Q5SHN6_236-306 3.1e-18 1 CL0575 Y 235 305   
SmpB Family O66640_10-131 5.9e-52 1 No_clan K 9 130   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: Small protein B (SmpB)
    Superfamily: Small protein B (SmpB)
      Family: Small protein B (SmpB)
Small protein B (SmpB) K 1 130 -
Class: All beta proteins
  Fold: Reductase/isomerase/elongation factor common domain
    Superfamily: Translation proteins
      Family: Elongation factors
Elongation factor Tu (EF-Tu), domain 2 Y 213 312 -
Class: All beta proteins
  Fold: Elongation factor/aminomethyltransferase common domain
    Superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
      Family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Elongation factor Tu (EF-Tu) Y 313 405 -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: G proteins
Elongation factor Tu (EF-Tu), N-terminal (G) domain Y 9 212 -
GO terms
Protein chains: GO type: GO description:
K=2-131 C cytoplasm
K=2-131 F RNA binding
Y=2-406 F GTP binding
Y=2-406 F translation elongation factor activity
Y=2-406 F GTPase activity
Y=2-406 P GTP catabolic process
Sequences
Download file with secondary structure created by Stride  
1zc8.pdb1.pdb:   [ download sequences in FASTA format ]
K (protein): 
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Y (protein): 
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A (rna): 
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B (rna): 
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C (rna): 
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F (rna): 
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G (rna): 
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H (rna): 
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I (rna): 
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J (rna): 
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Z (rna): 
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