General information
PDB ID 1ZR4
Title STRUCTURE OF A SYNAPTIC GAMMA-DELTA RESOLVASE TETRAMER COVALENTLY LINKED TO TWO CLEAVED DNAS
PDB header RECOMBINATION/DNA
Date 2005-05-19
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.4
Kind dna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1zr4.pdb ABED XZYJIKUWVMON 0
Biounits:
1zr4.pdb1.pdb ABED XZYJIKUWVMON 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Resolvase Domain P03012_3-139 2.9e-39 1 No_clan A 3 139 ZX   
HTH_7 Domain P03012_141-182 9.8e-09 1 CL0123 A 141 182 XY  H-Bb H-Mj L-Bb L-Mj L-Mn 
Resolvase Domain P03012_3-139 2.8e-39 1 No_clan B 3 139 I   
HTH_7 Domain P03012_141-182 9.8e-09 1 CL0123 B 141 182 JK  H-Bb H-Mj L-Bb L-Mj L-Mn 
Resolvase Domain P03012_3-139 2.8e-39 1 No_clan D 3 139 OM   
HTH_7 Domain P03012_141-182 9.8e-09 1 CL0123 D 141 182 MN  H-Bb H-Mj L-Bb L-Mj L-Mn 
Resolvase Domain P03012_3-139 2.9e-39 1 No_clan E 3 139 WU   
HTH_7 Domain P03012_141-182 9.8e-09 1 CL0123 E 141 182 UV  H-Bb H-Mj L-Bb L-Mj L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Recombinase DNA-binding domain
gamma,delta resolvase (C-terminal domain) A 141 183 XY  H-Bb H-Mj L-Bb L-Mj L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Recombinase DNA-binding domain
gamma,delta resolvase (C-terminal domain) B 141 183 JK  H-Bb H-Mj L-Bb L-Mj L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Recombinase DNA-binding domain
gamma,delta resolvase (C-terminal domain) D 141 183 MN  H-Bb H-Mj L-Bb L-Mj L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Recombinase DNA-binding domain
gamma,delta resolvase (C-terminal domain) E 141 183 UV  H-Bb H-Mj L-Bb L-Mj L-Mn 
Class: Alpha and beta proteins (a/b)
  Fold: Resolvase-like
    Superfamily: Resolvase-like
      Family: gamma,delta resolvase, catalytic domain
gamma,delta resolvase, catalytic domain A 1 140 ZX -
Class: Alpha and beta proteins (a/b)
  Fold: Resolvase-like
    Superfamily: Resolvase-like
      Family: gamma,delta resolvase, catalytic domain
gamma,delta resolvase, catalytic domain B 2 140 I -
Class: Alpha and beta proteins (a/b)
  Fold: Resolvase-like
    Superfamily: Resolvase-like
      Family: gamma,delta resolvase, catalytic domain
gamma,delta resolvase, catalytic domain D 2 140 OMN -
Class: Alpha and beta proteins (a/b)
  Fold: Resolvase-like
    Superfamily: Resolvase-like
      Family: gamma,delta resolvase, catalytic domain
gamma,delta resolvase, catalytic domain E 1 140 WU -
GO terms
Protein chains: GO type: GO description:
A/B/D/E=1-183 F DNA binding
A/B/D/E=1-183 F recombinase activity
A/B/D/E=1-183 P DNA integration
Sequences
Download file with secondary structure created by Stride  
1zr4.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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K (dna): 
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M (dna): 
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N (dna): 
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O (dna): 
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U (dna): 
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V (dna): 
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W (dna): 
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X (dna): 
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Y (dna): 
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Z (dna): 
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A (protein): 
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B (protein): 
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D (protein): 
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E (protein): 
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