General information
PDB ID 1ZVV
Title CRYSTAL STRUCTURE OF A CCPA-CRH-DNA COMPLEX
PDB header TRANSCRIPTION/DNA
Date 2005-06-02
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.98
Kind dna
Organism BACILLUS SUBTILIS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1zvv.pdb AWBPGJ OTR 0
Biounits:
1zvv.pdb1.pdb AW O 1
1zvv.pdb2.pdb BP T 1
1zvv.pdb3.pdb GJ R 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Peripla_BP_3 Domain P25144_170-332 1.3e-34 1 CL0144 A 169 331   
LacI Domain P25144_5-50 6.9e-18 1 CL0123 A 4 49 O   
Peripla_BP_3 Domain P25144_170-332 1.3e-34 1 CL0144 B 169 331   
LacI Domain P25144_5-50 6.9e-18 1 CL0123 B 4 49 T   
Peripla_BP_3 Domain P25144_170-332 1.3e-34 1 CL0144 G 169 331   
LacI Domain P25144_5-50 3.5e-14 1 CL0123 G 4 49 R   
PTS-HPr Domain O06976_2-83 1.7e-28 1 No_clan J 2 83   
PTS-HPr Domain O06976_2-83 1.7e-28 1 No_clan P 2 83   
PTS-HPr Domain O06976_2-83 1.7e-28 1 No_clan W 2 83   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: lambda repressor-like DNA-binding domains
    Superfamily: lambda repressor-like DNA-binding domains
      Family: GalR/LacI-like bacterial regulator
Glucose-resistance amylase regulator CcpA, N-terminal domain A 1 59 O -
Class: All alpha proteins
  Fold: lambda repressor-like DNA-binding domains
    Superfamily: lambda repressor-like DNA-binding domains
      Family: GalR/LacI-like bacterial regulator
Glucose-resistance amylase regulator CcpA, N-terminal domain B 1 59 T -
Class: All alpha proteins
  Fold: lambda repressor-like DNA-binding domains
    Superfamily: lambda repressor-like DNA-binding domains
      Family: GalR/LacI-like bacterial regulator
Glucose-resistance amylase regulator CcpA, N-terminal domain G 1 59 R -
Class: Alpha and beta proteins (a/b)
  Fold: Periplasmic binding protein-like I
    Superfamily: Periplasmic binding protein-like I
      Family: L-arabinose binding protein-like
Glucose-resistance amylase regulator CcpA, C-terminal domain A 60 332 -
Class: Alpha and beta proteins (a/b)
  Fold: Periplasmic binding protein-like I
    Superfamily: Periplasmic binding protein-like I
      Family: L-arabinose binding protein-like
Glucose-resistance amylase regulator CcpA, C-terminal domain B 60 332 -
Class: Alpha and beta proteins (a/b)
  Fold: Periplasmic binding protein-like I
    Superfamily: Periplasmic binding protein-like I
      Family: L-arabinose binding protein-like
Glucose-resistance amylase regulator CcpA, C-terminal domain G 60 332 -
Class: Alpha and beta proteins (a+b)
  Fold: HPr-like
    Superfamily: HPr-like
      Family: HPr-like
Crh, catabolite repression HPr-like protein J 1 84 -
Class: Alpha and beta proteins (a+b)
  Fold: HPr-like
    Superfamily: HPr-like
      Family: HPr-like
Crh, catabolite repression HPr-like protein P 1 84 -
Class: Alpha and beta proteins (a+b)
  Fold: HPr-like
    Superfamily: HPr-like
      Family: HPr-like
Crh, catabolite repression HPr-like protein W 1 84 -
GO terms
Protein chains: GO type: GO description:
A/B/G=5-333 C intracellular
A/B/G=5-333 F DNA binding
A/B/G=5-333 F sequence-specific DNA binding transcription factor activity
A/B/G=5-333 P transcription, DNA-dependent
J/P/W=1-85 F sugar:hydrogen symporter activity
J/P/W=1-85 P phosphoenolpyruvate-dependent sugar phosphotransferase system
Sequences
Download file with secondary structure created by Stride  
1zvv.pdb1.pdb:   [ download sequences in FASTA format ]
O (dna): 
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A (protein): 
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W (protein): 
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1zvv.pdb2.pdb:   [ download sequences in FASTA format ]
T (dna): 
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B (protein): 
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P (protein): 
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1zvv.pdb3.pdb:   [ download sequences in FASTA format ]
R (dna): 
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G (protein): 
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J (protein): 
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