General information
PDB ID 2D5V
Title CRYSTAL STRUCTURE OF HNF-6ALPHA DNA-BINDING DOMAIN IN COMPLEX WITH THE TTR PROMOTER
PDB header TRANSCRIPTION/DNA
Date 2005-11-07
Experimental method X-RAY DIFFRACTION
Resolution (A) 2
Kind dna
Organism RATTUS NORVEGICUS
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2d5v.pdb AB CDEF 0
Biounits:
2d5v.pdb1.pdb A CD 1
2d5v.pdb2.pdb B EF 1
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
CUT Domain 1.5e-32 1 CL0123 A 1 78 CD
Homeobox Domain 0.00000000049 1 CL0123 A 78 152 CD
CUT Domain 1.5e-32 1 CL0123 B 1 78 EF
Homeobox Domain 0.00000000049 1 CL0123 B 78 152 EF
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=289-444 C nucleus
A/B=289-444 F sequence-specific DNA binding
A/B=289-444 F RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
A/B=289-444 F RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
A/B=289-444 F DNA binding
A/B=289-444 P glucose metabolic process
Sequences
Download file with secondary structure created by Stride  
2d5v.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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2d5v.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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B (protein): 
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