General information
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| PDB ID | 2FDH |
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| Title | CRYSTAL STRUCTURE OF ALKB IN COMPLEX WITH MN(II), 2-OXOGLUTARATE, AND METHYLATED TRINUCLEOTIDE T-MEA-T | ||||
| PDB header | OXIDOREDUCTASE/DNA | ||||
| Date | 2005-12-14 | ||||
| Experimental method | X-RAY DIFFRACTION | ||||
| Resolution (A) | 2.1 | ||||
| Kind | dna | ||||
| Organism | ESCHERICHIA COLI K12 | ||||
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Quick Links
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Composition of PDB entry and biounits
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| File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
| PDB entry: | |||||
| pdb2fdh.pdb | A | B | 0 |
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| Biounits: | |||||
| 2fdh.pdb1.pdb | A | B | 1 |
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Pfam domains
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| Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
2OG-FeII_Oxy_2
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Domain | 3.8e-56 | 1 |
CL0029
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A | 18 | 210 | B |
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SCOP domains
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| Classification: | Protein: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
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Class: All beta proteins
Fold: Double-stranded beta-helix
Superfamily: Clavaminate synthase-like
Family: AlkB-like
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Alkylated DNA repair protein AlkB | A | 15 | 214 | B | - |
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| GO terms | ||
| Protein chains: | GO type: | GO description: |
| A=12-216 | F | DNA-N1-methyladenine dioxygenase activity |
| A=12-216 | F | oxidative RNA demethylase activity |
| A=12-216 | F | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| A=12-216 | F | cytosine C-5 DNA demethylase activity |
| A=12-216 | F | ferrous iron binding |
| A=12-216 | P | oxidative single-stranded DNA demethylation |
| A=12-216 | P | oxidative single-stranded RNA demethylation |
| A=12-216 | P | DNA dealkylation involved in DNA repair |
| A=12-216 | P | RNA repair |
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Sequences
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Download file with secondary structure created by Stride
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2fdh.pdb1.pdb:
[
download sequences in FASTA format
]
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B (dna):
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A (protein):
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