General information
PDB ID 2R5Y
Title STRUCTURE OF SCR/EXD COMPLEX BOUND TO A CONSENSUS HOX-EXD SITE
PDB header TRANSCRIPTION/DNA
Date 2007-09-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.6
Kind dna
Organism DROSOPHILA MELANOGASTER
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2r5y.pdb AB CD 0
Biounits:
2r5y.pdb1.pdb AB CD 1
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
Homeobox Domain 1.3e-22 1 CL0123 A 87 158 CD
Homeobox Domain 1.5e-19 1 CL0123 B 205 257 CD
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
Extradenticle (exd) homeodomain B 205 259 CD  H-Bb H-Mj L-Bb 
GO terms
Protein chains: GO type: GO description:
A=298-384 C nucleus
A=298-384 F sequence-specific DNA binding transcription factor activity
A=298-384 F RNA polymerase II regulatory region sequence-specific DNA binding
A=298-384 P sex differentiation
A=298-384 P specification of segmental identity, labial segment
A=298-384 P midgut development
A=298-384 P salivary gland boundary specification
A=298-384 P positive regulation of transcription from RNA polymerase II promoter
A=298-384 P sex comb development
B=238-300 C transcription factor complex
B=238-300 C cytoplasm
B=238-300 F RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
B=238-300 F transcription coactivator activity
B=238-300 F sequence-specific DNA binding
B=238-300 P eye development
B=238-300 P brain development
B=238-300 P peripheral nervous system development
B=238-300 P oenocyte development
B=238-300 P protein import into nucleus, translocation
B=238-300 P leg disc proximal/distal pattern formation
Sequences
Download file with secondary structure created by Stride  
2r5y.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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