General information
PDB ID 2AJQ
Title STRUCTURE OF REPLICATIVE DNA POLYMERASE PROVIDES INSIGTS INTO THE MECHANISMS FOR PROCESSIVITY, FRAMESHIFTING AND EDITING
PDB header TRANSFERASE,TRANSCRIPTION/DNA
Date 2005-08-02
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.6
Kind dna
Organism ENTEROBACTERIA PHAGE T7, ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2ajq.pdb ABFI PTXZ 0
Biounits:
2ajq.pdb1.pdb AB PT 1
2ajq.pdb2.pdb FI XZ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Thioredoxin Domain P0AA25_4-106 3.3e-34 1 CL0172 B 3 105 P  L-Bb 
Thioredoxin Domain P0AA25_4-106 3.3e-34 1 CL0172 I 3 105   
DNA_pol_A Family P00581_316-702 1.3e-55 1 No_clan A 312 702 PT  H-Bb H-Mn S-Bb L-Bb L-Mn 
DNA_pol_A Family P00581_316-702 1.3e-55 1 No_clan F 318 702 XZ  H-Bb S-Bb L-Bb L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a/b)
  Fold: Thioredoxin fold
    Superfamily: Thioredoxin-like
      Family: Thioltransferase
Thioredoxin B 3 107 P -
Class: Alpha and beta proteins (a/b)
  Fold: Thioredoxin fold
    Superfamily: Thioredoxin-like
      Family: Thioltransferase
Thioredoxin I 3 107 -
GO terms
Protein chains: GO type: GO description:
A/F=1-704 F 3'-5' exonuclease activity
A/F=1-704 F DNA binding
A/F=1-704 F DNA-directed DNA polymerase activity
A/F=1-704 F exodeoxyribonuclease activity
A/F=1-704 F metal ion binding
A/F=1-704 F nucleotide binding
A/F=1-704 P DNA synthesis involved in DNA replication
A/F=1-704 P DNA-dependent DNA replication
A/F=1-704 P viral DNA genome replication
B/I=2-109 C cytoplasm
B/I=2-109 C cytosol
B/I=2-109 F DNA polymerase processivity factor activity
B/I=2-109 F oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
B/I=2-109 F protein disulfide oxidoreductase activity
B/I=2-109 F protein-disulfide reductase activity
B/I=2-109 P cell redox homeostasis
B/I=2-109 P glycerol ether metabolic process
B/I=2-109 P positive regulation of DNA-directed DNA polymerase activity
B/I=2-109 P viral process
Sequences
Download file with secondary structure created by Stride  
2ajq.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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2ajq.pdb2.pdb:   [ download sequences in FASTA format ]
X (dna): 
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Z (dna): 
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F (protein): 
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I (protein): 
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